Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 5.0e-100 367.9 194 100.0
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 1.4e-70 270.0 173 84.4
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 1.8e-70 269.6 199 78.4
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 1.8e-70 269.6 194 79.4
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 5.3e-70 268.1 198 77.8
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 7.2e-67 257.7 193 75.1
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 2.7e-66 255.8 193 75.1
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 6.1e-66 254.6 185 77.8
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 2.3e-65 252.7 199 74.9
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.3e-65 252.7 199 74.9
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 2.3e-65 252.7 191 75.9
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 3.0e-65 252.3 197 72.1
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 6.8e-65 251.1 196 75.5
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.0e-64 249.6 199 73.9
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 2.6e-64 249.2 167 80.2
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 5.7e-64 248.1 199 73.9
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 7.5e-64 247.7 200 71.5
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 1.3e-63 246.9 195 72.8
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.3e-63 246.9 199 73.9
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 1.7e-63 246.5 195 73.8
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 2.2e-63 246.1 170 78.2
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 2.8e-63 245.7 175 77.1
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 2.8e-63 245.7 195 72.3
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 3.7e-63 245.4 169 80.5
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 3.7e-63 245.4 188 73.9
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 4.8e-63 245.0 195 72.8
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 4.8e-63 245.0 176 77.3
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 6.3e-63 244.6 192 71.9
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 3.1e-62 242.3 187 71.1
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 4.1e-62 241.9 193 71.5
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 5.4e-62 241.5 200 70.0
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 7.0e-62 241.1 196 71.9
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 7.0e-62 241.1 196 73.0
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 9.1e-62 240.7 192 73.4
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 9.1e-62 240.7 160 81.2
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 1.2e-61 240.4 198 72.7
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 1.6e-61 240.0 158 83.5
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 2.0e-61 239.6 178 74.7
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 2.0e-61 239.6 178 74.7
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 2.0e-61 239.6 204 69.6
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 2.7e-61 239.2 153 83.7
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 3.5e-61 238.8 153 84.3
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 3.5e-61 238.8 203 71.9
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 4.5e-61 238.4 163 81.6
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 5.9e-61 238.0 189 69.3
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 5.9e-61 238.0 192 71.4
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 7.7e-61 237.7 163 81.6
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 1.0e-60 237.3 196 70.4
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.0e-60 237.3 193 69.4
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.0e-60 237.3 193 69.4
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 1.0e-60 237.3 190 71.1
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 1.0e-60 237.3 161 80.7
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 1.3e-60 236.9 195 72.3
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 1.7e-60 236.5 195 72.8
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.9e-60 235.7 193 68.9
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 3.8e-60 235.3 160 78.8
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 1.5e-59 233.4 203 67.5
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.5e-59 233.4 153 81.7
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 1.9e-59 233.0 161 79.5
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 2.5e-59 232.6 197 70.1
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 5.5e-59 231.5 160 81.2
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 9.4e-59 230.7 147 87.1
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 9.4e-59 230.7 169 75.7
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 1.2e-58 230.3 160 80.6
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 8.0e-58 227.6 190 68.9
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 8.0e-58 227.6 195 68.7
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 1.0e-57 227.3 158 78.5
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 3.0e-57 225.7 168 74.4
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 1.2e-56 223.8 152 81.6
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 1.5e-56 223.4 195 66.2
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 1.5e-56 223.4 195 66.2
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 2.0e-56 223.0 165 76.4
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 2.6e-56 222.6 195 66.2
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 2.6e-56 222.6 197 67.0
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 3.4e-56 222.2 189 66.1
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 1.3e-55 220.3 174 69.5
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 1.7e-55 219.9 196 64.8
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 2.8e-55 219.2 167 71.9
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 3.7e-55 218.8 160 73.1
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 3.7e-55 218.8 155 77.4
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 8.3e-55 217.6 187 67.9
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 1.1e-54 217.2 162 74.7
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 1.4e-54 216.9 181 68.0
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 1.8e-54 216.5 192 66.7
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 3.1e-54 215.7 188 65.4
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 3.1e-54 215.7 200 67.0
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 5.4e-54 214.9 196 69.9
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 7.0e-54 214.5 202 61.4
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 7.0e-54 214.5 191 67.0
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 9.2e-54 214.2 152 75.7
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 1.2e-53 213.8 163 76.1
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 1.6e-53 213.4 198 63.6
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 1.6e-53 213.4 198 63.6
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 2.0e-53 213.0 163 75.5
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 5.9e-53 211.5 151 76.8
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 7.7e-53 211.1 167 70.7
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 1.3e-52 210.3 164 73.2
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 1.7e-52 209.9 203 62.1
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 2.3e-52 209.5 119 95.0
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 3.8e-52 208.8 162 71.6
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 2.3e-49 199.5 131 80.2
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 2.0e-48 196.4 165 69.7
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 4.9e-47 191.8 148 70.9
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 8.3e-47 191.0 162 66.7
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 1.6e-45 186.8 146 69.2
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 7.8e-45 184.5 130 74.6
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 3.9e-44 182.2 156 64.1
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 8.6e-44 181.0 173 59.0
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.9e-43 179.9 119 79.0
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 2.5e-43 179.5 117 81.2
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 7.3e-43 177.9 117 83.8
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 1.2e-42 177.2 130 72.3
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 9.2e-38 161.0 109 78.9
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 1.2e-37 160.6 176 50.6
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 1.6e-37 160.2 130 62.3
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 2.8e-34 149.4 134 61.9
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 5.2e-33 145.2 154 58.4
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 9.8e-32 141.0 186 51.1
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.3e-31 140.6 86 89.5
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.9e-31 139.4 86 89.5
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 4.9e-31 138.7 86 88.4
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 8.3e-31 137.9 143 54.5
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 2.7e-29 132.9 137 61.3
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 3.1e-25 119.4 92 72.8
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 8.9e-25 117.9 86 73.3
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 1.6e-21 107.1 78 73.1
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 3.5e-21 105.9 120 60.0
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 8.9e-17 91.3 60 71.7
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 1.4e-06 57.4 105 33.3


User provided reference genes

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