Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 5.8e-95 350.9 181 100.0
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.0e-82 309.3 246 70.3
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.7e-78 296.2 283 61.5
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 3.5e-71 271.9 179 83.2
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 2.4e-64 249.2 176 75.6
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.4e-64 249.2 179 74.9
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 3.1e-64 248.8 175 75.4
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.1e-64 248.4 179 73.7
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 9.1e-64 247.3 181 73.5
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 9.1e-64 247.3 181 73.5
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 9.1e-64 247.3 177 72.9
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.2e-63 246.9 176 75.0
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 2.0e-63 246.1 183 71.0
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.5e-63 245.0 179 73.7
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.9e-62 242.3 175 75.4
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 3.8e-62 241.9 169 75.1
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 6.5e-62 241.1 179 72.1
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 9.4e-61 237.3 167 74.9
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.7e-60 235.7 162 75.3
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 1.0e-59 233.8 173 71.7
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.0e-59 233.8 173 74.6
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 1.4e-59 233.4 170 75.3
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 2.3e-59 232.6 180 70.6
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 3.0e-59 232.3 175 72.6
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 3.0e-59 232.3 175 72.6
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 4.0e-59 231.9 173 74.0
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 4.0e-59 231.9 166 72.9
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 5.2e-59 231.5 170 70.6
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 5.2e-59 231.5 173 74.6
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.5e-58 229.9 173 69.9
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 5.7e-58 228.0 181 66.3
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 7.5e-58 227.6 175 68.6
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.7e-57 226.5 168 74.4
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 2.8e-57 225.7 159 74.2
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 3.7e-57 225.3 176 68.8
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 6.3e-57 224.6 175 69.1
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 1.8e-56 223.0 175 70.3
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 3.1e-56 222.2 172 64.5
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.3e-56 221.5 179 62.0
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 9.1e-56 220.7 151 74.8
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.2e-55 220.3 177 68.4
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 7.7e-55 217.6 176 70.5
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.7e-55 217.6 181 62.4
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 5.0e-54 214.9 170 65.9
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 8.5e-54 214.2 174 64.4
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 1.1e-53 213.8 176 68.2
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.1e-53 213.8 168 69.6
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.1e-53 213.8 184 65.2
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 1.9e-53 213.0 183 67.2
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 1.2e-52 210.3 172 66.9
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.6e-52 209.9 178 65.2
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 2.7e-52 209.1 192 57.3
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 2.7e-52 209.1 159 71.7
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 4.7e-52 208.4 172 66.9
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 4.7e-52 208.4 181 58.0
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 6.1e-52 208.0 185 58.4
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.0e-51 207.2 169 68.6
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.4e-51 206.8 174 65.5
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 3.0e-51 205.7 167 66.5
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 6.8e-51 204.5 179 58.7
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 2.0e-50 203.0 170 61.8
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 7.5e-50 201.1 206 56.8
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 4.8e-49 198.4 172 61.0
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 6.3e-49 198.0 146 69.9
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 1.4e-48 196.8 171 60.8
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.4e-48 196.8 169 63.9
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.8e-48 196.4 185 63.2
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.8e-48 196.4 177 59.3
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 2.4e-48 196.1 139 71.2
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.4e-48 196.1 176 60.8
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 4.1e-48 195.3 173 59.5
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 4.1e-48 195.3 174 59.8
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 9.1e-48 194.1 179 60.9
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 2.0e-47 193.0 175 61.7
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 3.5e-47 192.2 173 58.4
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 3.5e-47 192.2 181 61.9
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 4.5e-47 191.8 173 60.1
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 4.5e-47 191.8 173 60.1
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 4.5e-47 191.8 153 71.9
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 5.9e-47 191.4 173 59.0
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 5.9e-47 191.4 173 58.4
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 5.9e-47 191.4 172 60.5
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 1.0e-46 190.7 175 58.9
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.3e-46 190.3 174 59.2
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.3e-46 190.3 177 61.6
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.3e-46 190.3 173 58.4
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.3e-46 190.3 180 59.4
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.7e-46 189.9 175 61.1
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 2.3e-46 189.5 172 62.2
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 2.9e-46 189.1 122 77.9
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 3.8e-46 188.7 171 59.1
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 3.8e-46 188.7 171 59.1
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 6.6e-46 188.0 174 58.0
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 8.6e-46 187.6 177 61.0
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 1.1e-45 187.2 171 58.5
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 5.5e-45 184.9 171 57.9
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 4.7e-44 181.8 149 65.1
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 6.1e-44 181.4 185 56.2
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.4e-43 180.3 172 57.0
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 2.3e-43 179.5 145 62.8
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.3e-43 179.5 173 60.1
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 5.2e-43 178.3 168 58.3
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 5.2e-43 178.3 167 59.3
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 9.8e-42 174.1 174 55.7
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.7e-39 166.0 176 57.4
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 2.7e-39 166.0 180 53.3
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 2.7e-39 166.0 146 59.6
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 2.3e-38 162.9 230 43.0
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 6.6e-38 161.4 139 59.0
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 1.1e-37 160.6 121 66.9
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.5e-37 159.5 133 62.4
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.5e-37 159.5 138 56.5
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 5.6e-37 158.3 120 64.2
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 1.0e-35 154.1 176 54.5
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 4.4e-34 148.7 151 55.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 3.7e-33 145.6 115 66.1
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.9e-33 145.2 120 57.5
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 9.2e-32 141.0 117 60.7
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 9.2e-32 141.0 124 57.3
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.6e-31 138.7 149 49.7
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.6e-31 138.7 149 49.7
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 7.8e-31 137.9 269 36.8
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.9e-29 133.3 161 47.2
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.2e-28 130.6 149 47.7
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 2.3e-27 126.3 128 56.2
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 2.3e-27 126.3 128 56.2
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.0e-26 123.2 138 50.0
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.6e-26 122.9 100 57.0
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 4.1e-24 115.5 180 41.7
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 5.4e-24 115.2 137 44.5
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.3e-22 110.5 148 50.7
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 1.6e-20 103.6 86 66.3
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 6.2e-20 101.7 103 52.4
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 3.4e-18 95.9 115 53.9
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 1.1e-16 90.9 169 37.3
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-14 84.0 88 55.7
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.5e-13 80.5 88 54.5
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 2.5e-13 79.7 88 54.5
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 2.5e-13 79.7 88 54.5
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 1.6e-12 77.0 88 52.3
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-11 74.3 84 52.4
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-11 74.3 84 52.4
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 4.9e-09 65.5 58 62.1
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 4.2e-08 62.4 48 64.6
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 2.1e-07 60.1 64 53.1
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.1e-07 60.1 59 59.3
QL02p004134 Quercus lobata HOM05D005090 ORTHO05D006142 6.0e-07 58.5 66 57.6


User provided reference genes

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