Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 8.0e-255 883.2 444 100.0
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.8e-230 802.4 448 91.1
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 7.6e-229 797.0 448 90.4
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 2.0e-160 569.7 467 65.5
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 8.3e-159 564.3 461 66.4
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.0e-141 506.5 380 73.9
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 6.6e-140 501.5 467 58.9
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.0e-137 494.2 469 58.2
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 3.1e-137 492.7 469 58.6
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.5e-136 488.0 453 58.5
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 2.9e-135 486.1 469 57.6
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 6.4e-135 485.0 469 57.1
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 8.3e-135 484.6 477 56.0
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.0e-133 479.9 470 57.0
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 6.0e-133 478.4 470 56.8
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 7.8e-133 478.0 470 57.0
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.9e-132 475.7 461 58.4
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 3.9e-132 475.7 466 56.0
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 6.6e-132 474.9 466 57.1
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.5e-131 473.8 449 56.8
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 7.3e-131 471.5 488 56.1
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.7e-124 450.3 478 55.4
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.3e-123 445.7 459 56.4
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 3.6e-122 442.6 476 54.6
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.4e-121 440.7 427 58.3
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 5.8e-120 435.3 434 56.5
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.8e-120 435.3 470 53.0
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 2.7e-117 426.4 466 53.9
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.7e-116 423.7 481 54.3
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 8.6e-116 421.4 471 53.5
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 1.2e-114 417.5 460 53.3
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 3.6e-114 416.0 381 59.6
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.1e-114 414.8 381 59.3
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.4e-113 414.1 381 59.3
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 1.4e-113 414.1 483 50.7
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.8e-113 413.7 423 57.0
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 2.4e-113 413.3 481 52.6
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 4.0e-113 412.5 473 53.3
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-112 411.0 506 48.8
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.2e-112 411.0 470 52.3
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 5.8e-112 408.7 504 48.8
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 2.2e-111 406.8 421 57.5
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 4.9e-111 405.6 375 60.3
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 4.9e-111 405.6 477 50.7
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.1e-110 404.4 479 50.1
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 2.4e-110 403.3 483 52.2
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 2.4e-110 403.3 484 51.4
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.4e-110 403.3 423 53.4
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 5.4e-110 402.1 479 52.4
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 5.4e-110 402.1 477 52.0
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 7.1e-110 401.7 482 49.8
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.2e-109 401.0 419 53.7
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.6e-109 400.6 432 54.9
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.6e-109 400.6 479 52.2
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 2.7e-109 399.8 408 54.7
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 3.5e-109 399.4 477 51.8
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.5e-109 399.4 479 53.0
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.5e-109 399.4 479 52.4
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 6.0e-109 398.7 483 50.1
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.7e-108 397.1 479 52.4
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.7e-108 397.1 495 49.1
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 1.7e-108 397.1 485 48.9
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 5.1e-108 395.6 470 51.7
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 6.6e-108 395.2 450 51.8
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 8.7e-108 394.8 471 50.3
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 7.3e-107 391.7 480 50.0
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.8e-106 389.8 388 54.4
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 1.1e-105 387.9 473 50.7
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.8e-105 387.1 486 48.1
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 2.4e-105 386.7 378 56.9
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.2e-104 384.4 413 53.5
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 9.9e-104 381.3 469 48.2
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.4e-103 378.6 432 51.4
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 6.4e-103 378.6 481 48.9
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 3.2e-102 376.3 395 51.9
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 3.3e-99 366.3 393 53.2
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 2.0e-96 357.1 445 49.4
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 7.6e-96 355.1 479 47.2
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 3.8e-95 352.8 452 47.6
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.1e-94 351.3 400 52.2
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 3.2e-94 349.7 464 46.8
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 3.2e-94 349.7 423 48.0
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 3.2e-94 349.7 474 47.5
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 3.2e-94 349.7 429 50.3
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.2e-94 349.4 384 51.3
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.7e-93 346.7 477 46.8
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.7e-93 346.7 435 46.7
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 6.0e-93 345.5 458 46.9
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 7.9e-93 345.1 474 45.8
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.0e-92 344.7 431 47.8
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.0e-92 343.2 333 57.4
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 1.1e-91 341.3 472 46.0
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 1.1e-91 341.3 403 49.1
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.9e-91 340.5 488 43.0
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.9e-91 340.5 477 45.7
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 3.3e-91 339.7 387 52.2
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 9.6e-91 338.2 421 49.6
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.0e-88 330.5 382 49.5
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 5.8e-88 328.9 431 45.5
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 3.8e-87 326.2 463 43.0
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.2e-85 321.2 403 46.2
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.3e-84 317.8 484 43.2
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.9e-83 313.9 425 44.5
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 2.8e-82 310.1 374 50.0
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 4.8e-82 309.3 487 39.6
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 8.2e-82 308.5 278 61.9
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 3.1e-81 306.6 486 43.6
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 6.9e-81 305.4 444 44.6
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 3.4e-80 303.1 474 43.0
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 4.2e-78 296.2 483 41.4
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 7.1e-78 295.4 485 41.9
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 9.3e-78 295.0 485 41.4
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 3.5e-77 293.1 487 41.1
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.1e-75 288.1 465 40.2
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 7.4e-75 285.4 434 42.4
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 4.8e-74 282.7 485 38.8
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 3.2e-70 270.0 479 39.0
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 7.9e-69 265.4 434 40.8
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 5.1e-68 262.7 442 41.2
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 5.1e-68 262.7 193 68.4
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.1e-67 261.5 442 41.0
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 2.5e-67 260.4 469 38.6
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 4.1e-65 253.1 417 40.0
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 4.1e-65 253.1 375 41.3
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 5.3e-65 252.7 223 57.4
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 2.6e-64 250.4 194 66.5
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 7.7e-64 248.8 327 45.3
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 8.5e-63 245.4 404 39.4
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.5e-56 224.6 407 37.3
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.1e-54 218.4 484 33.1
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.2e-53 214.9 439 36.4
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.4e-52 211.5 415 35.2
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 2.0e-51 207.6 193 56.0
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.1e-49 201.8 419 35.1
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 9.1e-49 198.7 164 57.3
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.1e-45 187.6 369 34.7
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.0e-44 183.3 409 34.2
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 4.0e-44 183.3 412 34.7
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 7.0e-41 172.6 168 53.6
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 7.0e-41 172.6 168 53.6
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 8.5e-39 165.6 322 41.3
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.5e-38 164.9 352 32.4
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.4e-36 158.3 110 62.7
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.2e-35 155.2 245 41.6
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.2e-35 155.2 245 41.6
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.3e-34 151.8 165 50.3
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.1e-33 148.7 166 49.4
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 4.1e-33 146.7 165 48.5
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.0e-32 144.4 325 36.9
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.3e-31 141.7 164 43.3
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.1e-30 138.7 425 26.6
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.2e-25 120.6 134 47.8
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 8.0e-21 105.9 246 32.1
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 1.1e-14 85.5 84 57.1
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 3.1e-12 77.4 118 39.8


User provided reference genes

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