Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009946 Carpinus fangiana HOM05D002687 ORTHO05D002052 2.3e-143 512.3 271 100.0
Haze_23312 Corylus avellana HOM05D002687 ORTHO05D002052 5.0e-90 335.1 229 79.0
CiPaw.14G095400 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.6e-32 142.9 231 45.0
CiPaw.14G095900 Carya illinoinensis HOM05D002687 ORTHO05D002052 8.1e-32 141.7 230 44.8
QL01p011200 Quercus lobata HOM05D002687 ORTHO05D002052 2.3e-31 140.2 193 45.1
CiPaw.14G095600 Carya illinoinensis HOM05D002687 ORTHO05D002052 6.8e-31 138.7 231 43.7
CiPaw.14G095800 Carya illinoinensis HOM05D002687 ORTHO05D002052 6.8e-31 138.7 231 43.7
Sabra09G0012300 Salix brachista HOM05D002687 ORTHO05D002052 8.7e-18 95.1 205 31.2
TPR.G4667 Trifolium pratense HOM05D002687 ORTHO05D002052 1.6e-16 90.9 198 30.8
Ciclev10029214m.g Citrus clementina HOM05D002687 ORTHO05D002052 2.1e-16 90.5 211 31.8
Medtr2g087080 Medicago truncatula HOM05D002687 ORTHO05D002052 8.1e-16 88.6 217 28.1
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.4e-15 87.8 184 34.2
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 3.1e-15 86.7 200 30.5
Medtr4g051652 Medicago truncatula HOM05D002687 ORTHO05D002052 4.0e-15 86.3 191 32.5
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.9e-15 85.5 199 33.2
Eucgr.B03820 Eucalyptus grandis HOM05D002687 ORTHO05D002052 2.0e-14 84.0 201 28.9
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 2.6e-14 83.6 235 29.8
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 3.4e-14 83.2 230 29.6
Duzib168G2137 Durio zibethinus HOM05D002687 ORTHO05D002052 7.6e-14 82.0 240 28.8
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 7.6e-14 82.0 189 30.2
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 9.9e-14 81.6 215 28.8
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 9.9e-14 81.6 235 29.4
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 2.2e-13 80.5 192 28.1
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 2.2e-13 80.5 214 30.8
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.9e-13 80.1 193 30.1
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.8e-13 79.7 182 31.9
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.8e-13 79.7 185 31.9
Lj3g0023997 Lotus japonicus HOM05D002687 ORTHO05D002052 8.4e-13 78.6 208 29.8
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 8.4e-13 78.6 172 32.0
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.1e-12 78.2 155 34.2
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.4e-12 77.8 193 30.1
arahy.Tifrunner.gnm1.ann1.UY1REM Arachis hypogaea HOM05D002687 ORTHO05D002052 1.9e-12 77.4 204 29.9
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 2.4e-12 77.0 185 31.4
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 2.4e-12 77.0 220 25.9
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 4.2e-12 76.3 196 32.1
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 4.2e-12 76.3 181 28.7
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.4e-12 75.9 224 31.2
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.3e-12 75.1 220 29.1
arahy.Tifrunner.gnm1.ann1.N0JQU4 Arachis hypogaea HOM05D002687 ORTHO05D002052 1.2e-11 74.7 204 28.9
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.2e-11 74.7 174 31.6
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.2e-11 74.7 174 31.6
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 1.6e-11 74.3 211 31.8
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 1.6e-11 74.3 198 29.3
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 3.5e-11 73.2 172 31.4
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 4.6e-11 72.8 178 33.1
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 4.6e-11 72.8 201 28.4
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 4.6e-11 72.8 237 28.7
Glyma.12G093700 Glycine max HOM05D002687 ORTHO05D002052 4.6e-11 72.8 197 31.0
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.6e-11 72.8 214 27.1
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.6e-11 72.8 214 27.1
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 1.7e-10 70.9 201 28.4
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 1.7e-10 70.9 220 25.9
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 2.3e-10 70.5 204 28.4
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 2.3e-10 70.5 174 27.0
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 2.3e-10 70.5 192 26.6
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 3.0e-10 70.1 201 26.9
Phvul.011G098100 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 3.9e-10 69.7 195 30.8
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 5.1e-10 69.3 202 31.2
PGR102G2129 Punica granatum HOM05D002687 ORTHO05D002052 5.1e-10 69.3 190 27.9
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 6.6e-10 68.9 224 27.7
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 6.6e-10 68.9 240 26.7
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 6.6e-10 68.9 240 26.7
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 8.7e-10 68.6 218 28.4
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 8.7e-10 68.6 170 27.1
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 8.7e-10 68.6 192 26.0
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 1.1e-09 68.2 204 28.9
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.1e-09 68.2 171 29.2
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 1.5e-09 67.8 218 28.4
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 1.5e-09 67.8 181 28.7
Aqoxy1G00685 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 1.9e-09 67.4 182 25.3
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 1.9e-09 67.4 208 25.0
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.9e-09 67.4 239 26.4
VMungo1080G0268 Vigna mungo HOM05D002687 ORTHO05D002052 1.9e-09 67.4 234 24.8
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 2.5e-09 67.0 164 30.5
COL.COLO4_22671 Corchorus olitorius HOM05D002687 ORTHO05D002052 2.5e-09 67.0 221 29.4
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 2.5e-09 67.0 183 26.8
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 3.3e-09 66.6 236 26.3
Phvul.005G120800 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 3.3e-09 66.6 195 26.2
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 4.3e-09 66.2 164 30.5
Atru.chr3.3133 Acer truncatum HOM05D002687 ORTHO05D002052 5.6e-09 65.9 184 30.4
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 5.6e-09 65.9 191 24.1
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 5.6e-09 65.9 186 26.9
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 7.3e-09 65.5 219 27.4
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 7.3e-09 65.5 220 25.0
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 9.6e-09 65.1 172 27.3
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 9.6e-09 65.1 193 29.5
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 1.3e-08 64.7 185 29.7
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 1.3e-08 64.7 184 28.8
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 1.3e-08 64.7 240 25.8
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 1.6e-08 64.3 237 25.7
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.6e-08 64.3 211 24.6
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 2.1e-08 63.9 219 26.9
CARHR119770 Cardamine hirsuta HOM05D002687 ORTHO05D002052 2.1e-08 63.9 218 28.4
Eucgr.B03819 Eucalyptus grandis HOM05D002687 ORTHO05D002052 2.1e-08 63.9 224 24.1
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.1e-08 63.9 198 28.8
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 2.1e-08 63.9 180 26.7
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 2.8e-08 63.5 219 26.5
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 2.8e-08 63.5 240 24.6
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.8e-08 63.5 253 25.3
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 3.6e-08 63.2 191 28.3
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 3.6e-08 63.2 225 25.8
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 3.6e-08 63.2 200 27.0
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 4.8e-08 62.8 184 25.5
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 4.8e-08 62.8 192 25.5
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 1.1e-07 61.6 194 24.7
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.1e-07 61.6 175 26.3
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.1e-07 61.6 215 27.0
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 1.1e-07 61.6 160 29.4
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 1.1e-07 61.6 178 29.8
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 1.1e-07 61.6 222 25.7
VMungo1127G1798 Vigna mungo HOM05D002687 ORTHO05D002052 1.1e-07 61.6 209 30.1
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 1.4e-07 61.2 227 27.3
Ciclev10029940m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.4e-07 61.2 160 35.0
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.4e-07 61.2 240 24.6
Potri.009G020000 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.4e-07 61.2 123 32.5
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 1.8e-07 60.8 196 24.0
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 1.8e-07 60.8 218 26.6
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 1.8e-07 60.8 179 26.3
CSS0036580 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 2.4e-07 60.5 171 29.2
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 2.4e-07 60.5 211 25.6
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 2.4e-07 60.5 236 25.8
Thecc.09G274300 Theobroma cacao HOM05D002687 ORTHO05D002052 2.4e-07 60.5 221 22.2
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 3.1e-07 60.1 209 24.4
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 3.1e-07 60.1 243 23.9
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 3.1e-07 60.1 175 29.7
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 4.0e-07 59.7 216 26.9
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 4.0e-07 59.7 175 28.0
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 5.3e-07 59.3 188 25.0
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 5.3e-07 59.3 235 25.5
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 6.9e-07 58.9 150 30.0
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 9.0e-07 58.5 211 25.1
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.2e-06 58.2 198 25.3
TPR.G4231 Trifolium pratense HOM05D002687 ORTHO05D002052 1.2e-06 58.2 184 28.3
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.2e-06 58.2 188 25.0
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 1.5e-06 57.8 174 25.3
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 1.5e-06 57.8 211 24.6
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 1.5e-06 57.8 231 25.1
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 1.5e-06 57.8 212 25.9
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 2.0e-06 57.4 239 23.8
Glyma.10G080800 Glycine max HOM05D008136 ORTHO05D002052 2.0e-06 57.4 229 24.9
Lj5g0011569 Lotus japonicus HOM05D008136 ORTHO05D002052 2.0e-06 57.4 173 24.3
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 2.6e-06 57.0 221 25.8
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 2.6e-06 57.0 196 28.1
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 2.6e-06 57.0 221 27.1
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 2.6e-06 57.0 171 26.9
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 2.6e-06 57.0 184 26.6
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 3.4e-06 56.6 221 26.2
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 3.4e-06 56.6 184 25.0
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 3.4e-06 56.6 187 25.1
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 3.4e-06 56.6 187 25.1
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 3.4e-06 56.6 193 25.4
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 4.5e-06 56.2 172 26.7
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.5e-06 56.2 221 24.0
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 4.5e-06 56.2 233 24.9
Potri.017G154000 Populus trichocarpa HOM05D000973 ORTHO05D000652 4.5e-06 56.2 122 32.8
unitig_899.g15378 Utricularia gibba HOM05D002687 ORTHO05D002052 4.5e-06 56.2 186 27.4
Ca_09051_v3 Cicer arietinum L. HOM05D008136 ORTHO05D002052 5.8e-06 55.8 188 27.1
Eucgr.J00556 Eucalyptus grandis HOM05D002687 ORTHO05D002052 5.8e-06 55.8 211 25.1
PGR102G2886 Punica granatum HOM05D002687 ORTHO05D002052 5.8e-06 55.8 166 30.7
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 7.6e-06 55.5 192 24.0
ClCG01G013940 Citrullus lanatus HOM05D012313 ORTHO05D015614 9.9e-06 55.1 187 23.5
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 9.9e-06 55.1 193 21.8


User provided reference genes

Program Settings