Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 2.9e-220 768.5 440 100.0
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 6.8e-206 720.7 440 95.0
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 3.6e-199 698.4 439 92.3
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.7e-193 679.5 481 78.0
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 3.0e-193 678.7 438 89.7
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 2.4e-190 669.1 441 88.2
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 6.6e-185 651.0 441 85.7
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.5e-184 649.0 441 86.2
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 9.0e-182 640.6 441 85.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.0e-181 639.4 441 84.4
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 2.0e-181 639.4 441 83.7
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.6e-181 639.0 441 84.1
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 2.6e-181 639.0 440 84.3
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.9e-180 635.6 439 84.7
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 3.8e-180 635.2 441 84.4
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.9e-179 632.9 439 84.5
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.2e-178 630.2 441 81.9
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.3e-177 625.9 441 80.3
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 3.9e-177 625.2 438 82.9
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 5.1e-177 624.8 438 83.1
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 6.7e-177 624.4 440 82.0
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 8.7e-177 624.0 438 80.6
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.5e-176 623.2 438 80.4
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 2.5e-176 622.5 442 82.8
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 1.3e-175 620.2 438 81.7
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.8e-175 619.0 443 81.7
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 8.1e-175 617.5 437 81.7
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.4e-174 616.7 441 83.0
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.4e-174 616.7 438 82.4
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.8e-174 616.3 438 79.2
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 3.1e-174 615.5 443 74.9
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 6.9e-174 614.4 441 80.3
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.2e-173 613.6 438 82.6
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 7.6e-173 610.9 438 82.2
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 7.6e-173 610.9 438 79.7
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 9.9e-173 610.5 441 81.0
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 9.9e-173 610.5 439 82.0
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 1.3e-172 610.1 444 82.0
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 2.2e-172 609.4 438 82.0
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.4e-171 606.7 442 78.7
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.2e-171 605.1 441 79.1
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 5.5e-171 604.7 441 79.1
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 7.1e-171 604.4 440 79.1
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.6e-170 603.2 439 78.6
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.7e-170 602.4 441 78.9
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 6.0e-170 601.3 441 79.4
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 7.9e-170 600.9 441 78.5
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.8e-169 599.7 441 79.8
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 2.3e-169 599.4 441 78.5
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 5.1e-169 598.2 442 79.4
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 5.1e-169 598.2 441 79.8
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 6.7e-169 597.8 441 79.6
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 1.1e-168 597.0 441 81.0
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.5e-168 596.7 441 80.3
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 1.5e-168 596.7 432 80.3
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.9e-168 596.3 439 80.2
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 1.9e-168 596.3 445 78.0
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.9e-168 596.3 441 79.6
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 4.3e-168 595.1 437 72.1
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 4.3e-168 595.1 437 72.1
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 4.3e-168 595.1 441 80.3
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.3e-167 593.6 441 79.6
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 2.8e-167 592.4 439 78.4
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 2.4e-166 589.3 441 78.0
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 5.3e-166 588.2 438 79.0
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 9.0e-166 587.4 443 79.5
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.5e-165 586.6 443 79.0
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 4.9e-164 581.6 441 76.4
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 4.6e-162 575.1 472 72.9
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 4.6e-162 575.1 441 77.3
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.3e-161 573.5 438 76.9
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 5.1e-161 571.6 438 74.9
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 5.1e-161 571.6 441 73.7
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.1e-160 570.5 439 77.0
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.9e-160 569.7 455 74.3
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 1.9e-160 569.7 439 77.0
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 3.1e-158 562.4 461 72.0
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 3.4e-157 558.9 436 76.8
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.0e-156 557.4 530 66.8
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 8.5e-156 554.3 436 76.4
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 8.5e-156 554.3 436 76.4
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 2.5e-155 552.7 436 75.7
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 7.2e-155 551.2 441 75.7
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.2e-154 550.4 441 74.6
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.1e-154 548.1 441 74.6
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.4e-153 547.0 441 73.5
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.5e-152 543.5 438 73.7
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.5e-152 543.5 401 81.8
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.0e-152 543.1 441 73.0
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 2.2e-151 539.7 442 71.5
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.8e-151 538.5 441 72.8
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.1e-150 537.3 443 72.9
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.1e-150 537.3 441 73.2
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.4e-150 537.0 365 75.9
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.8e-150 536.6 441 66.9
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 4.1e-150 535.4 440 72.5
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 4.1e-150 535.4 444 66.2
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 4.1e-150 535.4 364 74.7
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 3.8e-148 528.9 364 74.2
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 2.8e-143 512.7 366 72.4
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.4e-142 509.6 367 72.5
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 3.1e-142 509.2 416 74.5
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 4.1e-142 508.8 437 70.7
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 4.5e-141 505.4 441 69.6
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 3.8e-140 502.3 384 78.6
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 4.2e-139 498.8 442 60.9
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 1.7e-135 486.9 436 68.1
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 4.8e-135 485.3 436 66.1
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.0e-129 467.6 438 66.7
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 6.8e-129 464.9 439 68.8
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 5.7e-128 461.8 441 60.1
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 3.1e-126 456.1 439 63.6
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.0e-108 397.9 298 69.5
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.6e-106 390.6 440 56.4
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.0e-105 387.9 341 61.6
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.5e-104 384.0 441 52.8
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.2e-95 353.6 315 65.1
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 2.7e-93 346.7 440 50.2
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 2.4e-81 307.0 288 69.8
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.5e-64 249.6 394 40.9
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 9.0e-57 225.3 437 41.6
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.4e-56 223.4 217 56.7
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 7.4e-51 205.7 167 69.5
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.2e-50 202.6 151 71.5
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 5.8e-48 196.1 482 40.2
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.1e-46 191.8 123 78.0
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.1e-41 175.3 374 31.6
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 3.1e-41 173.7 134 67.9
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.7e-39 167.9 121 76.9
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.4e-38 164.9 491 35.0
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 9.4e-38 162.2 142 62.7
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.2e-30 136.7 156 54.5
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.8e-28 131.3 220 41.4
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 2.6e-27 127.5 91 74.7
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 1.1e-19 102.1 117 51.3
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.7e-18 98.2 101 87.1
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 7.7e-16 89.4 107 53.3
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 2.3e-12 77.8 47 83.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.3e-12 77.8 59 69.5
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 7.5e-11 72.8 60 61.7
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 1.4e-09 68.6 67 52.2
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 2.4e-09 67.8 41 87.8
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 5.4e-09 66.6 61 57.4
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 1.6e-08 65.1 62 56.5
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 3.5e-08 63.9 392 21.4
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 5.9e-08 63.2 55 63.6
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 3.8e-07 60.5 97 44.3
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 8.5e-07 59.3 34 88.2


User provided reference genes

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