Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 3499.5 1822 100.0
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 3041.1 1817 86.5
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2985.7 1872 82.3
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2713.3 1822 77.3
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2709.1 1818 76.6
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2706.8 1813 76.1
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2700.2 1822 76.1
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2692.9 1822 76.8
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2677.9 1803 75.9
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2677.5 1822 76.1
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2657.1 1822 75.1
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2650.2 1822 75.0
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2649.4 1819 75.4
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2647.8 1819 75.1
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2642.1 1848 74.4
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2635.5 1818 74.9
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2635.1 1817 74.7
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2632.8 1848 74.1
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2629.0 1820 74.2
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2628.2 1822 74.4
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2628.2 1817 74.6
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2626.3 1822 74.0
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2620.1 1817 74.6
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2614.3 1819 74.8
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2610.9 1817 74.1
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2607.8 1808 74.8
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2606.6 1816 74.3
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2596.6 1816 73.9
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2581.2 1817 73.8
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2577.7 1817 73.6
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2565.4 1840 72.9
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2556.6 1820 73.4
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2546.5 1839 72.3
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2539.2 1816 71.7
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2536.1 1828 72.0
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2535.8 1825 71.9
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2534.2 1811 71.8
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2533.8 1819 72.8
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2524.2 1808 72.5
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2523.4 2370 59.0
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2518.4 1807 71.4
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2498.0 1826 70.0
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2493.8 1798 72.5
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2490.7 1802 69.7
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2484.9 1850 70.8
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2476.0 1815 70.1
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2473.7 1818 69.3
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2473.4 1818 68.6
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2470.7 1821 69.2
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2459.5 1822 70.1
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2434.8 1816 69.9
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2432.1 1825 68.4
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2420.2 1820 68.8
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2414.0 1815 68.9
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2410.2 1816 67.2
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2407.1 1816 68.0
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2388.2 1824 67.3
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2382.4 1817 67.5
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2380.5 1815 67.1
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2380.1 1815 67.5
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2372.8 1827 67.7
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2371.3 1812 66.9
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2370.5 1829 66.9
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2365.1 1827 67.4
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2362.0 1822 66.6
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2348.5 1822 66.5
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2347.4 1827 66.3
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2344.3 1821 66.4
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2338.1 1988 62.8
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2315.4 1825 66.3
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2308.5 1849 64.9
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 2296.5 1348 91.0
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2290.8 1904 63.4
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2274.6 1831 64.6
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2274.2 1840 64.5
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2195.6 1800 63.0
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2156.7 1483 75.1
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2122.8 1818 60.4
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 2105.5 1501 71.0
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 2072.7 1399 76.1
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1920.2 1355 71.9
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1890.5 1327 72.9
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1875.1 1310 74.0
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1874.0 1404 69.0
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1700.3 1341 67.8
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1667.5 1232 71.3
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1634.0 1838 51.1
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1632.1 1876 48.0
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1577.4 1866 47.1
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1577.0 1887 47.1
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1531.5 1150 69.1
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1491.9 1092 70.1
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1421.4 1641 47.8
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1400.2 1358 58.1
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1333.5 1119 61.8
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1168.7 1053 58.9
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1132.9 906 63.0
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 3.2e-289 999.6 1575 38.2
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.1e-281 972.6 886 57.6
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 7.6e-251 872.1 636 70.3
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.6e-248 864.4 1726 33.5
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.4e-241 840.5 792 55.6
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 4.3e-238 829.7 1739 33.4
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 4.4e-214 750.0 600 66.7
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 5.7e-214 749.6 456 88.2
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 1.0e-210 738.8 509 74.5
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 2.7e-192 677.6 457 76.1
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 6.8e-191 672.9 455 75.4
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 4.7e-184 650.2 675 52.4
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.5e-169 602.1 2018 27.8
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 3.9e-162 577.4 451 68.1
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.8e-160 571.2 499 58.5
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.4e-151 542.3 347 77.5
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 1.3e-136 492.7 314 77.7
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 5.6e-129 467.2 374 69.0
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.1e-127 463.0 827 38.3
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 1.6e-107 396.0 1638 23.7
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 9.7e-105 386.7 290 68.3
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 3.2e-100 371.7 298 65.1
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 3.2e-100 371.7 297 65.7
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.3e-82 312.4 278 57.9
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 8.5e-77 293.9 161 88.2
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 2.1e-75 289.3 196 78.6
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 4.5e-70 271.6 338 50.9
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.3e-66 259.2 345 40.9
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 4.1e-63 248.4 162 73.5
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.0e-58 233.8 206 57.3
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 1.2e-54 220.3 341 44.0
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 5.0e-53 214.9 198 58.1
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.5e-52 212.6 147 70.7
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.7e-48 199.9 161 70.8
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 1.9e-47 196.4 151 72.2
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 6.0e-46 191.4 290 43.1
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 1.7e-45 189.9 234 52.1
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 6.6e-45 188.0 177 60.5
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 3.3e-44 185.7 128 73.4
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 5.2e-42 178.3 218 45.4
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 3.5e-38 165.6 174 49.4
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 7.8e-38 164.5 167 58.7
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.8e-34 153.3 149 55.0
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.2e-32 146.4 258 36.8
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 9.2e-31 141.0 175 51.4
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 3.9e-29 135.6 172 42.4
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 6.9e-26 124.8 91 69.2
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 9.0e-26 124.4 77 81.8
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.3e-24 120.6 92 66.3
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 7.1e-23 114.8 76 75.0
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.0e-22 111.7 133 47.4
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 6.0e-22 111.7 155 41.3
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.6e-20 104.4 84 56.0
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 2.8e-19 102.8 104 51.9
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 9.9e-17 94.4 196 27.0
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 9.9e-17 94.4 78 64.1
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 4.2e-15 89.0 79 64.6
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 2.1e-14 86.7 91 47.3
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.7e-14 86.3 115 41.7
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 2.3e-13 83.2 55 67.3
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 3.3e-12 79.3 60 61.7
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 2.4e-10 73.2 80 58.8
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.0e-10 72.4 117 40.2
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 2.0e-09 70.1 78 52.6
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.9e-07 63.5 48 60.4
MELO3C034995.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.2e-06 60.8 48 60.4
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.1e-06 60.1 38 73.7


User provided reference genes

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