Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 4.9e-194 681.0 363 100.0
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 7.5e-142 507.7 363 80.2
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 4.5e-78 295.8 407 50.9
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 2.9e-69 266.5 409 48.4
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 1.3e-64 251.1 422 42.7
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 3.6e-51 206.5 405 41.7
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 6.3e-48 195.7 383 42.0
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 5.3e-47 192.6 399 39.3
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 2.0e-46 190.7 399 39.3
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 7.7e-46 188.7 399 38.8
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 1.3e-45 188.0 387 39.3
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 1.7e-45 187.6 395 39.0
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 8.5e-45 185.3 402 37.8
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 5.7e-41 172.6 418 37.6
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 1.7e-40 171.0 358 38.8
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 2.0e-38 164.1 388 36.9
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 2.7e-38 163.7 376 38.0
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 5.9e-38 162.5 399 37.8
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 2.2e-37 160.6 407 34.9
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 2.9e-37 160.2 395 37.2
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 8.5e-37 158.7 383 36.3
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 1.9e-36 157.5 361 39.1
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 3.2e-36 156.8 375 35.5
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 5.5e-36 156.0 375 35.2
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 5.5e-36 156.0 390 34.4
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 4.0e-34 149.8 384 35.4
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 6.8e-34 149.1 386 35.8
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 1.2e-33 148.3 375 33.3
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 1.5e-33 147.9 375 35.5
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 2.6e-33 147.1 384 34.9
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 3.4e-33 146.7 361 37.4
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 3.4e-33 146.7 386 35.0
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 5.7e-33 146.0 390 34.9
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 7.5e-33 145.6 403 36.2
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 1.7e-32 144.4 409 34.5
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 3.7e-32 143.3 299 41.5
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 6.3e-32 142.5 374 33.7
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 8.3e-32 142.1 376 33.0
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 1.1e-31 141.7 341 36.7
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 2.4e-31 140.6 362 35.4
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 6.6e-29 132.5 387 32.8
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 1.1e-28 131.7 331 38.1
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 9.5e-28 128.6 343 36.7
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 9.5e-28 128.6 357 35.3
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 3.0e-26 123.6 361 34.3
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 4.0e-26 123.2 386 31.9
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 1.5e-25 121.3 395 31.1
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 2.0e-25 120.9 379 32.7
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 3.4e-25 120.2 309 38.5
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 2.0e-22 110.9 251 36.3
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.0e-21 108.6 365 32.3
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 1.7e-21 107.8 258 35.3
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 3.9e-21 106.7 368 32.1
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 3.9e-21 106.7 396 30.3
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 6.6e-21 105.9 184 47.3
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 8.6e-21 105.5 258 34.9
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 8.6e-21 105.5 261 34.9
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 8.6e-21 105.5 390 29.2
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 4.3e-20 103.2 387 30.7
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 9.5e-20 102.1 378 30.2
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 2.1e-19 100.9 385 32.5
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 1.4e-18 98.2 395 29.1
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 4.0e-18 96.7 391 30.2
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 4.0e-18 96.7 390 29.7
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 5.2e-18 96.3 358 30.7
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 3.4e-17 93.6 376 29.8
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 4.4e-17 93.2 364 29.7
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 5.8e-17 92.8 374 29.9
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 3.7e-16 90.1 169 44.4
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 6.4e-16 89.4 346 30.3
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 1.4e-15 88.2 359 30.4
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 5.4e-15 86.3 228 34.2
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 5.4e-15 86.3 354 29.9
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 3.0e-13 80.5 392 27.6
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 3.9e-13 80.1 88 55.7
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 1.1e-12 78.6 205 39.5
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 7.3e-12 75.9 317 29.0
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 1.6e-11 74.7 155 38.1
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 6.2e-11 72.8 228 34.2
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 8.3e-08 62.4 110 40.9
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 1.9e-07 61.2 283 29.7
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 1.9e-07 61.2 134 41.0
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 1.6e-06 58.2 157 33.8
DCAR_029019 Daucus carota HOM05D001841 ORTHO05D001767 2.1e-06 57.8 88 42.0


User provided reference genes

Program Settings