Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 7.4e-121 437.2 215 100.0
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 7.9e-115 417.2 218 95.0
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.6e-49 199.5 212 50.0
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 2.6e-49 199.5 151 62.9
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.4e-49 198.7 211 52.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 1.3e-48 197.2 154 60.4
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 3.7e-48 195.7 147 60.5
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 3.7e-48 195.7 230 47.4
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 3.2e-47 192.6 255 44.7
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 3.2e-47 192.6 143 62.2
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 4.1e-47 192.2 145 65.5
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 5.4e-47 191.8 145 65.5
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 3.5e-46 189.1 235 45.5
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 6.0e-46 188.3 143 64.3
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.0e-45 187.6 146 59.6
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.0e-45 187.6 146 59.6
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.0e-45 187.6 146 59.6
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 2.3e-45 186.4 172 54.1
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 5.0e-45 185.3 146 58.2
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 6.6e-45 184.9 172 52.3
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 8.6e-45 184.5 256 43.4
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 1.5e-44 183.7 221 44.3
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.9e-44 183.3 148 58.1
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.9e-44 183.3 172 53.5
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.5e-44 183.0 143 60.8
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.5e-44 183.0 172 52.3
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 2.1e-43 179.9 235 44.7
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 4.7e-43 178.7 208 45.2
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 6.2e-43 178.3 207 45.9
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 5.2e-42 175.3 143 59.4
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.6e-41 172.9 143 60.1
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.4e-40 168.3 127 61.4
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 1.1e-39 167.5 193 45.6
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 5.4e-39 165.2 193 45.1
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.6e-38 163.7 193 45.1
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 3.5e-38 162.5 131 59.5
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 2.3e-37 159.8 242 39.3
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 3.0e-37 159.5 149 50.3
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 3.9e-37 159.1 187 47.1
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 5.6e-36 155.2 143 54.5
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 2.8e-35 152.9 237 41.8
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 1.4e-34 150.6 214 37.9
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 6.8e-34 148.3 201 42.8
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 7.6e-33 144.8 130 51.5
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.9e-32 142.9 235 39.6
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.1e-31 141.0 196 40.3
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.9e-31 140.2 146 45.9
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 9.2e-31 137.9 187 38.5
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 1.6e-30 137.1 122 48.4
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.7e-30 136.3 149 45.0
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 3.5e-30 136.0 195 42.6
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 3.0e-29 132.9 169 41.4
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 3.0e-29 132.9 127 48.0
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 1.1e-28 131.0 159 41.5
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 2.5e-28 129.8 207 40.1
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 3.3e-28 129.4 133 47.4
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 1.2e-27 127.5 121 47.1
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 1.2e-27 127.5 128 45.3
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.1e-27 126.7 192 39.6
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 3.6e-27 125.9 127 52.0
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 3.6e-27 125.9 130 47.7
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 8.1e-27 124.8 170 41.8
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.1e-26 124.4 133 45.9
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 1.4e-26 124.0 138 46.4
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.8e-26 123.6 158 43.0
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.8e-26 123.6 133 45.9
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.8e-26 123.6 132 46.2
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 2.4e-26 123.2 138 45.7
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 3.1e-26 122.9 138 44.9
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 3.1e-26 122.9 130 46.9
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 4.0e-26 122.5 138 45.7
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 5.2e-26 122.1 207 42.5
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.9e-26 121.7 107 53.3
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 6.9e-26 121.7 209 37.8
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 1.5e-25 120.6 191 38.2
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.5e-25 120.6 131 48.1
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 2.0e-25 120.2 138 44.9
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 3.4e-25 119.4 129 45.0
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 4.4e-25 119.0 131 48.1
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 4.4e-25 119.0 131 48.1
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.3e-24 117.5 178 39.9
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 1.7e-24 117.1 143 44.1
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 1.7e-24 117.1 134 46.3
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 2.9e-24 116.3 210 40.0
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.8e-24 115.9 136 42.6
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 4.9e-24 115.5 198 38.4
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 4.2e-23 112.5 185 36.8
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 9.3e-23 111.3 175 36.6
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 9.3e-23 111.3 127 37.8
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 1.2e-22 110.9 175 36.6
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 1.2e-22 110.9 177 37.3
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 2.1e-22 110.2 178 40.4
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 2.7e-22 109.8 134 37.3
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 4.6e-22 109.0 160 38.8
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 4.6e-22 109.0 128 43.0
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 6.0e-22 108.6 181 35.4
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 6.0e-22 108.6 181 35.4
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.3e-21 107.5 129 42.6
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 1.7e-21 107.1 175 35.4
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 2.3e-21 106.7 147 37.4
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 2.3e-21 106.7 126 42.9
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.0e-21 106.3 168 37.5
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 3.9e-21 105.9 175 35.4
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 3.9e-21 105.9 136 36.8
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 5.1e-21 105.5 201 34.3
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 5.1e-21 105.5 201 34.3
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 5.1e-21 105.5 201 34.3
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 5.1e-21 105.5 132 37.1
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 8.7e-21 104.8 117 47.9
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.5e-20 103.2 116 45.7
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 4.3e-20 102.4 180 33.9
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 5.6e-20 102.1 180 33.9
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.3e-19 100.9 158 40.5
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.6e-19 100.5 131 39.7
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 2.1e-19 100.1 129 44.2
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 4.8e-19 99.0 109 45.9
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 8.1e-19 98.2 116 43.1
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 1.1e-18 97.8 117 41.9
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 1.1e-18 97.8 211 33.2
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.4e-18 97.4 116 40.5
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.4e-18 97.4 118 40.7
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 1.8e-18 97.1 117 41.9
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 1.8e-18 97.1 98 52.0
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.1e-18 96.3 142 36.6
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 4.0e-18 95.9 125 41.6
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.0e-18 95.9 132 36.4
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 2.6e-17 93.2 156 37.8
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 4.5e-17 92.4 141 37.6
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 4.5e-17 92.4 156 37.8
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 4.5e-17 92.4 156 37.8
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 4.5e-17 92.4 156 37.8
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 5.8e-17 92.0 136 38.2
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 4.9e-16 89.0 156 37.8
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.4e-16 88.6 170 30.0
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.4e-16 88.6 141 35.5
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.4e-15 86.7 175 34.3
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 2.4e-15 86.7 121 37.2
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 4.2e-15 85.9 142 35.9
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 4.2e-15 85.9 142 35.9
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 7.1e-15 85.1 100 49.0
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.3e-15 84.7 188 32.4
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.3e-15 84.7 66 59.1
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 1.2e-14 84.3 105 41.9
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 2.1e-14 83.6 186 29.0
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.6e-14 82.4 134 34.3
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 4.6e-14 82.4 146 36.3
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.0e-13 81.3 180 32.8
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 1.8e-13 80.5 142 33.1
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 1.8e-13 80.5 94 44.7
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 3.0e-13 79.7 142 33.8
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 3.0e-13 79.7 142 33.8
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.9e-13 79.3 124 33.1
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.1e-13 79.0 133 34.6
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 5.1e-13 79.0 129 34.9
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.9e-12 77.0 134 33.6
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.9e-12 77.0 114 36.8
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.9e-12 77.0 109 37.6
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.5e-12 76.6 71 53.5
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 7.4e-12 75.1 87 50.6
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.6e-12 74.7 117 35.0
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 9.6e-12 74.7 128 35.2
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 9.6e-12 74.7 145 31.7
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 1.6e-11 73.9 179 30.7
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.1e-11 73.6 93 39.8
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 3.6e-11 72.8 108 36.1
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 4.8e-11 72.4 148 32.4
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 4.8e-11 72.4 148 32.4
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 1.1e-10 71.2 184 29.9
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.1e-10 71.2 78 46.2
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 1.4e-10 70.9 142 28.9
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 1.4e-10 70.9 142 28.9
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.8e-10 70.5 134 33.6
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.3e-10 68.9 169 30.8
Prupe.7G162100 Prunus persica HOM05D002733 ORTHO05D003856 1.5e-09 67.4 118 37.3
Phvul.004G169400 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 2.6e-09 66.6 116 33.6
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 5.8e-09 65.5 100 37.0
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 5.8e-09 65.5 107 36.4
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.6e-09 65.1 122 33.6
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 9.9e-09 64.7 137 29.9
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 9.9e-09 64.7 137 29.9
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 2.2e-08 63.5 116 32.8
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 2.9e-08 63.2 139 29.5
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.8e-08 62.8 90 34.4
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 4.9e-08 62.4 144 29.2
Nitab4.5_0001004g0110 Nicotiana tabacum HOM05D002733 ORTHO05D003856 4.9e-08 62.4 116 35.3
MBI18_g09775_MAGBIO Magnolia biondii HOM05D060425 ORTHO05D048574 1.1e-07 61.2 111 34.2
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-06 57.8 104 35.6
VMungo0464G0927 Vigna mungo HOM05D022012 ORTHO05D003856 6.0e-06 55.5 143 28.7


User provided reference genes

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