Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 2.7e-74 284.3 178 100.0
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 7.9e-66 256.1 178 83.7
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 2.0e-53 214.9 147 74.1
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 7.0e-46 189.9 175 58.3
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 5.0e-44 183.7 182 57.7
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 7.5e-40 169.9 129 68.2
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 3.6e-26 124.4 179 39.1
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 1.1e-22 112.8 180 40.0
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 1.6e-21 109.0 147 42.2
Atru.chr3.2947 Acer truncatum HOM05D006694 ORTHO05D008240 8.6e-20 103.2 106 52.8
Atru.chr3.2963 Acer truncatum HOM05D006694 ORTHO05D008240 8.6e-20 103.2 106 52.8
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 3.3e-19 101.3 153 37.3
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 4.3e-19 100.9 160 36.9
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 9.5e-19 99.8 142 40.8
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.0e-17 96.3 154 37.0
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 1.4e-17 95.9 154 37.0
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.4e-17 95.9 154 37.0
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 8.9e-17 93.2 150 34.0
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 1.2e-16 92.8 154 36.4
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 2.6e-16 91.7 138 39.9
Manes.01G178400 Manihot esculenta HOM05D006694 ORTHO05D008240 3.4e-16 91.3 77 53.2
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 9.8e-16 89.7 154 35.7
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 9.8e-16 89.7 178 32.0
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.3e-15 89.4 152 36.2
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.2e-15 88.6 154 34.4
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 6.4e-15 87.0 182 32.4
Dinv15034 Davidia involucrata HOM05D006694 ORTHO05D008240 6.4e-15 87.0 90 48.9
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 8.3e-15 86.7 174 32.2
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 1.1e-14 86.3 150 31.3
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 1.4e-14 85.9 139 33.1
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 1.4e-14 85.9 151 35.1
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 2.4e-14 85.1 152 38.8
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 3.2e-14 84.7 151 33.8
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 7.0e-14 83.6 155 34.8
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 9.2e-14 83.2 151 34.4
RcHm_v2.0_Chr7g0231581 Rosa chinensis HOM05D006694 ORTHO05D008240 1.2e-13 82.8 78 52.6
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 1.0e-12 79.7 160 33.1
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 1.3e-12 79.3 158 34.2
Potri.009G069600 Populus trichocarpa HOM05D006694 ORTHO05D008240 1.3e-12 79.3 94 45.7
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 3.0e-12 78.2 138 31.9
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 3.0e-12 78.2 160 31.9
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 3.0e-12 78.2 160 32.5
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 3.0e-12 78.2 160 33.1
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 3.9e-12 77.8 140 32.9
Sabra09G0052500 Salix brachista HOM05D006694 ORTHO05D008240 3.9e-12 77.8 98 48.0
Actinidia24456 Actinidia chinensis HOM05D006694 ORTHO05D008240 5.0e-12 77.4 98 43.9
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 5.0e-12 77.4 151 33.8
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 1.5e-11 75.9 49 73.5
MD15G1399800 Malus domestica HOM05D006694 ORTHO05D008240 1.9e-11 75.5 49 73.5
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.9e-11 75.5 140 33.6
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 3.3e-11 74.7 182 33.0
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 4.3e-11 74.3 50 70.0
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 7.3e-11 73.6 66 57.6
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 9.5e-11 73.2 157 33.1
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.6e-10 72.4 140 32.9
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 3.6e-10 71.2 54 57.4
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 6.2e-10 70.5 52 59.6
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 6.2e-10 70.5 140 31.4
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 1.1e-09 69.7 49 63.3
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 1.4e-09 69.3 155 29.7
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.3e-09 68.6 160 30.6
MSTRG.18464 Avicennia marina HOM05D006694 ORTHO05D008240 3.1e-09 68.2 178 40.4
Lsat_1_v5_gn_2_63881 Lactuca sativa HOM05D006694 ORTHO05D008240 5.2e-09 67.4 93 39.8
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.9e-09 66.6 162 31.5
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 8.9e-09 66.6 104 33.7
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 1.5e-08 65.9 52 61.5
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 2.0e-08 65.5 131 32.8
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 2.0e-08 65.5 131 32.8
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 3.4e-08 64.7 137 30.7
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 3.4e-08 64.7 145 30.3
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.4e-08 64.3 136 32.4
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 9.8e-08 63.2 131 32.1
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 1.3e-07 62.8 131 32.1
GSVIVG01037290001 Vitis vinifera HOM05D006694 ORTHO05D008240 1.3e-07 62.8 47 59.6
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 1.7e-07 62.4 53 56.6
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.2e-07 62.0 136 31.6
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.2e-07 62.0 136 31.6
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.2e-07 62.0 136 31.6
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 2.9e-07 61.6 179 27.4
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 2.9e-07 61.6 48 60.4
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.9e-07 60.8 162 30.2
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.9e-07 60.8 162 30.2
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 4.9e-07 60.8 149 30.2
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 6.4e-07 60.5 49 57.1
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 8.3e-07 60.1 124 30.6
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.4e-06 58.5 158 27.8
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 2.4e-06 58.5 132 28.0
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 4.1e-06 57.8 133 30.1
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 4.1e-06 57.8 52 53.8
Rhsim13G0208900 Rhododendron simsii HOM05D006694 ORTHO05D008240 5.4e-06 57.4 50 46.0


User provided reference genes

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