Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009858 Carpinus fangiana HOM05D006850 ORTHO05D008545 1.2e-148 529.6 240 100.0
Haze_23232 Corylus avellana HOM05D006850 ORTHO05D008545 1.2e-140 503.1 240 94.2
QL01p017096 Quercus lobata HOM05D006850 ORTHO05D008545 6.7e-115 417.5 238 76.9
CiPaw.14G112900 Carya illinoinensis HOM05D006850 ORTHO05D008545 8.8e-115 417.2 239 76.2
Prupe.4G265500 Prunus persica HOM05D006850 ORTHO05D008545 4.4e-106 388.3 241 73.0
TWI31G0452 Tripterygium wilfordii HOM05D006850 ORTHO05D008545 6.5e-102 374.4 237 68.8
MD03G1165500 Malus domestica HOM05D006850 ORTHO05D008545 8.5e-102 374.0 243 70.4
Eucgr.B03735 Eucalyptus grandis HOM05D006850 ORTHO05D008545 6.1e-100 367.9 241 66.0
Duzib150G1265 Durio zibethinus HOM05D006850 ORTHO05D008545 4.0e-99 365.2 232 70.7
PGR102G2982 Punica granatum HOM05D006850 ORTHO05D008545 4.0e-99 365.2 241 65.1
Potri.001G275300 Populus trichocarpa HOM05D006850 ORTHO05D008545 5.2e-99 364.8 247 66.8
Dinv36163 Davidia involucrata HOM05D006850 ORTHO05D008545 2.0e-98 362.8 249 65.9
Duzib170G0642 Durio zibethinus HOM05D006850 ORTHO05D008545 2.0e-98 362.8 238 68.5
Manes.02G139100 Manihot esculenta HOM05D006850 ORTHO05D008545 5.7e-98 361.3 247 66.4
Sabra16G0169600 Salix brachista HOM05D006850 ORTHO05D008545 5.7e-98 361.3 269 63.2
Gohir.D07G123600 Gossypium hirsutum HOM05D006850 ORTHO05D008545 1.7e-97 359.8 240 68.8
Gorai.001G133600 Gossypium raimondii HOM05D006850 ORTHO05D008545 1.7e-97 359.8 240 68.8
GSVIVG01037285001 Vitis vinifera HOM05D006850 ORTHO05D008545 2.2e-97 359.4 234 66.2
CANSAT54G0445 Cannabis sativa HOM05D006850 ORTHO05D008545 3.7e-97 358.6 238 66.8
arahy.Tifrunner.gnm1.ann1.5G2EZD Arachis hypogaea HOM05D006850 ORTHO05D008545 6.3e-97 357.8 246 68.3
arahy.Tifrunner.gnm1.ann1.TFQN26 Arachis hypogaea HOM05D006850 ORTHO05D008545 1.4e-96 356.7 246 68.3
CSS0022862 Camellia sinensis var. sinensis HOM05D006850 ORTHO05D008545 2.4e-96 355.9 227 68.7
Gohir.A07G119400 Gossypium hirsutum HOM05D006850 ORTHO05D008545 7.0e-96 354.4 240 68.3
Rhsim13G0209200 Rhododendron simsii HOM05D006850 ORTHO05D008545 9.2e-96 354.0 238 62.6
Glyma.20G041000 Glycine max HOM05D006850 ORTHO05D008545 1.6e-95 353.2 239 66.5
Hma1.2p1_0262F.1_g105345 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 2.0e-95 352.8 243 64.2
Hma1.2p1_3601F.1_g336990 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 2.0e-95 352.8 243 64.2
Actinidia06966 Actinidia chinensis HOM05D006850 ORTHO05D008545 7.8e-95 350.9 232 65.9
Glyma.07G232000 Glycine max HOM05D006850 ORTHO05D008545 7.8e-95 350.9 236 66.1
Oeu030634.1 Olea europaea HOM05D006850 ORTHO05D008545 1.0e-94 350.5 240 63.8
Phvul.006G014500 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 2.5e-93 345.9 241 66.0
VMungo0540G1950 Vigna mungo HOM05D006850 ORTHO05D008545 5.6e-93 344.7 240 65.4
Lj6g0025243 Lotus japonicus HOM05D006850 ORTHO05D008545 7.3e-93 344.4 263 62.4
Lalb_Chr21g0314461 Lupinus albus HOM05D006850 ORTHO05D008545 7.3e-93 344.4 231 68.4
Sc06g0004690 Simmondsia chinensis HOM05D006850 ORTHO05D008545 2.8e-92 342.4 232 63.8
Hund07436 Selenicereus undatus HOM05D006850 ORTHO05D008545 8.0e-92 340.9 235 63.4
Atru.chr3.2891 Acer truncatum HOM05D006850 ORTHO05D008545 1.0e-91 340.5 224 66.5
vmacro04034 Vaccinium macrocarpon HOM05D006850 ORTHO05D008545 1.4e-91 340.1 240 61.7
Cpa.g.sc157.64 Carica papaya HOM05D006850 ORTHO05D008545 2.3e-91 339.3 221 68.3
ClCG02G022830 Citrullus lanatus HOM05D006850 ORTHO05D008545 5.2e-91 338.2 245 62.0
TAR633G0745 Trochodendron aralioides HOM05D006850 ORTHO05D008545 5.2e-91 338.2 217 67.7
Ca_03895_v3 Cicer arietinum L. HOM05D006850 ORTHO05D008545 5.7e-90 334.7 244 64.3
Psat0s3115g0040 Pisum sativum HOM05D006850 ORTHO05D008545 9.8e-90 334.0 246 63.4
RcHm_v2.0_Chr5g0050481 Rosa chinensis HOM05D006850 ORTHO05D008545 9.8e-90 334.0 265 61.9
EL10Ac4g10117 Beta vulgaris HOM05D006850 ORTHO05D008545 2.2e-89 332.8 237 59.9
AUR62000194 Chenopodium quinoa HOM05D006850 ORTHO05D008545 3.7e-89 332.0 240 60.8
SalBow6G2930 Salvia bowleyana HOM05D006850 ORTHO05D008545 1.4e-88 330.1 227 62.6
Migut.D00666 Erythranthe guttata HOM05D006850 ORTHO05D008545 1.8e-88 329.7 234 62.0
Ah.06g194580 Amaranthus hybridus HOM05D006850 ORTHO05D008545 3.2e-88 328.9 241 58.9
Cc01_g05370 Coffea canephora HOM05D006850 ORTHO05D008545 4.1e-88 328.6 241 59.8
CsaV3_6G038970 Cucumis sativus L. HOM05D006850 ORTHO05D008545 5.4e-88 328.2 246 59.8
MSTRG.18462 Avicennia marina HOM05D006850 ORTHO05D008545 7.0e-88 327.8 239 60.3
MELO3C014560.2 Cucumis melo HOM05D006850 ORTHO05D008545 7.0e-88 327.8 246 59.3
Manes.01G178500 Manihot esculenta HOM05D006850 ORTHO05D008545 7.0e-88 327.8 219 66.7
Medtr0180s0050 Medicago truncatula HOM05D006850 ORTHO05D008545 1.6e-87 326.6 271 58.7
Sopen01g004290 Solanum pennellii HOM05D006850 ORTHO05D008545 2.0e-87 326.2 229 62.4
Ciclev10016719m.g Citrus clementina HOM05D006850 ORTHO05D008545 2.7e-87 325.9 201 69.2
Thhalv10026099m.g Eutrema salsugineum HOM05D006850 ORTHO05D008545 3.5e-87 325.5 246 61.4
Sed0015967 Sechium edule HOM05D006850 ORTHO05D008545 3.0e-86 322.4 248 60.1
Sp7g27010 Schrenkiella parvula HOM05D006850 ORTHO05D008545 8.6e-86 320.9 248 61.3
Solyc01g008780.3 Solanum lycopersicum HOM05D006850 ORTHO05D008545 8.6e-86 320.9 229 62.0
Peaxi162Scf00032g02418 Petunia axillaris HOM05D006850 ORTHO05D008545 1.5e-85 320.1 219 63.5
SGA_v2.0_scaffold29G12238 Striga asiatica HOM05D006850 ORTHO05D008545 1.5e-85 320.1 234 61.5
AL7G23370 Arabidopsis lyrata HOM05D006850 ORTHO05D008545 9.5e-85 317.4 260 58.1
AUR62006544 Chenopodium quinoa HOM05D006850 ORTHO05D008545 9.5e-85 317.4 231 61.0
BcaNung01334 Brassica carinata HOM05D004115 ORTHO05D005004 1.2e-84 317.0 247 61.5
CARHR236810 Cardamine hirsuta HOM05D006850 ORTHO05D008545 1.6e-84 316.6 260 57.7
ECA238G2187 Erigeron canadensis HOM05D006850 ORTHO05D008545 1.6e-84 316.6 213 63.8
PGSC0003DMG400022716 Solanum tuberosum HOM05D006850 ORTHO05D008545 4.7e-84 315.1 229 60.7
TPR.G16604 Trifolium pratense HOM05D006850 ORTHO05D008545 1.4e-83 313.5 199 71.4
Aa31LG2G21380 Aethionema arabicum HOM05D006850 ORTHO05D008545 2.3e-83 312.8 249 59.8
BolC1t01003H Brassica oleracea HOM05D006850 ORTHO05D008545 3.1e-83 312.4 247 61.9
Carub.0007s1152 Capsella rubella HOM05D006850 ORTHO05D008545 3.1e-83 312.4 273 55.7
Hund21980 Selenicereus undatus HOM05D006850 ORTHO05D008545 3.1e-83 312.4 222 63.1
BcaC07g38376 Brassica carinata HOM05D006850 ORTHO05D008545 5.2e-83 311.6 230 61.7
C08p11310 Brassica napus HOM05D006850 ORTHO05D008545 5.2e-83 311.6 230 61.7
BcaC09g51693 Brassica carinata HOM05D006850 ORTHO05D008545 1.2e-82 310.5 247 61.5
THA.LOC104826454 Tarenaya hassleriana HOM05D006850 ORTHO05D008545 1.5e-82 310.1 247 59.9
DCAR_024408 Daucus carota HOM05D006850 ORTHO05D008545 2.0e-82 309.7 269 55.0
unitig_0.g300 Utricularia gibba HOM05D006850 ORTHO05D008545 5.8e-82 308.1 228 60.1
Lsat_1_v5_gn_2_3500 Lactuca sativa HOM05D006850 ORTHO05D008545 2.2e-81 306.2 213 62.4
HanXRQChr14g0427601 Helianthus annuus HOM05D006850 ORTHO05D008545 2.9e-81 305.8 223 62.8
CAN.G64.14 Capsicum annuum HOM05D006850 ORTHO05D008545 3.7e-81 305.4 260 53.8
Thecc.09G248000 Theobroma cacao HOM05D006850 ORTHO05D008545 8.3e-81 304.3 200 67.0
Sed0010964 Sechium edule HOM05D006850 ORTHO05D008545 1.4e-80 303.5 243 57.2
AT4G29070 Arabidopsis thaliana HOM05D006850 ORTHO05D008545 3.2e-80 302.4 202 67.8
Phvul.009G232900 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 3.5e-79 298.9 237 61.6
COL.COLO4_32765 Corchorus olitorius HOM05D006850 ORTHO05D008545 3.0e-78 295.8 215 60.9
FAN16G3159 Fragaria x ananassa HOM05D006850 ORTHO05D008545 3.0e-78 295.8 244 60.2
FAN21G1525 Fragaria x ananassa HOM05D006850 ORTHO05D008545 3.0e-78 295.8 244 60.2
FAN25G3781 Fragaria x ananassa HOM05D006850 ORTHO05D008545 3.0e-78 295.8 244 60.2
BolC8t48803H Brassica oleracea HOM05D006850 ORTHO05D008545 6.6e-78 294.7 227 59.9
FvH4_3g27811 Fragaria vesca HOM05D006850 ORTHO05D008545 8.6e-78 294.3 244 59.4
PSO384G2311 Papaver somniferum HOM05D006850 ORTHO05D008545 2.1e-76 289.7 230 58.7
Nitab4.5_0003488g0060 Nicotiana tabacum HOM05D006850 ORTHO05D008545 6.2e-76 288.1 229 57.2
PSO339G1255 Papaver somniferum HOM05D006850 ORTHO05D008545 1.1e-75 287.3 230 57.8
Nitab4.5_0000718g0310 Nicotiana tabacum HOM05D006850 ORTHO05D008545 5.2e-75 285.0 218 58.3
Aqoxy1G00367 Aquilegia oxysepala HOM05D006850 ORTHO05D008545 7.5e-74 281.2 231 59.7
Nn7g36731 Nelumbo nucifera HOM05D006850 ORTHO05D008545 7.5e-74 281.2 200 61.5
A08p19760 Brassica napus HOM05D004115 ORTHO05D008545 1.3e-73 280.4 195 66.2
BraA08t33936Z Brassica rapa HOM05D004115 ORTHO05D008545 1.3e-73 280.4 195 66.2
MBI07_g26873_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 2.8e-68 262.7 228 58.3
MBI07_g21930_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 1.2e-66 257.3 231 57.1
A01p08930 Brassica napus HOM05D004115 ORTHO05D005004 2.9e-65 252.7 206 59.2
BraA01t00839Z Brassica rapa HOM05D004115 ORTHO05D005004 2.9e-65 252.7 206 59.2
ATR0745G042 Amborella trichopoda HOM05D006850 ORTHO05D008545 6.4e-65 251.5 174 64.9
Lj1P279T21 Lonicera japonica HOM05D006850 ORTHO05D008545 6.6e-62 241.5 160 66.2
CDE09G0720 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 1.1e-61 240.7 191 58.1
HPP92_025151 Vanilla planifolia HOM05D006850 ORTHO05D008545 6.9e-59 231.5 131 75.6
SHI34292 Sapria himalayana HOM05D006850 ORTHO05D008545 8.9e-59 231.1 199 56.3
CDE08G0294 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 6.0e-55 218.4 111 80.2
BcaB03g12596 Brassica carinata HOM05D006850 ORTHO05D008545 1.3e-54 217.2 227 48.9
SEGI_38632 Sequoiadendron giganteum HOM05D006850 ORTHO05D008545 5.3e-51 205.3 129 65.9
Mapoly0002s0074 Marchantia polymorpha HOM05D006850 ORTHO05D008545 6.0e-39 165.2 133 56.4
Pp3c15_13470 Physcomitrium patens HOM05D006850 ORTHO05D008545 1.4e-35 154.1 129 53.5
Pp3c9_17190 Physcomitrium patens HOM05D006850 ORTHO05D008545 4.0e-35 152.5 120 55.8
SMO145G0227 Selaginella moellendorffii HOM05D006850 ORTHO05D008545 2.9e-33 146.4 91 63.7
HPP92_025149 Vanilla planifolia HOM05D006850 ORTHO05D008545 1.4e-32 144.1 83 71.1
CBR_g29725 Chara braunii HOM05D006850 ORTHO05D008545 1.6e-28 130.6 85 61.2
Actinidia13010 Actinidia chinensis HOM05D006850 ORTHO05D008545 2.1e-15 87.0 155 36.8
EL10Ac4g10139 Beta vulgaris HOM05D006850 ORTHO05D008545 3.9e-06 56.2 113 33.6


User provided reference genes

Program Settings