Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 7.7e-135 483.8 242 100.0
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.4e-104 383.3 247 80.6
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.7e-102 376.3 239 79.9
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 7.3e-101 370.9 241 77.2
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.8e-99 366.3 241 78.4
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 5.8e-98 361.3 242 76.4
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 4.6e-95 351.7 243 73.7
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.1e-93 347.1 243 73.3
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 5.6e-93 344.7 242 74.0
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.2e-92 343.6 245 73.1
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 2.8e-92 342.4 241 73.0
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.8e-91 339.7 243 72.4
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 5.2e-91 338.2 217 78.8
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 2.0e-90 336.3 243 72.4
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 5.8e-90 334.7 259 65.6
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.3e-89 333.6 246 70.3
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 4.9e-89 331.6 175 94.9
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 6.4e-89 331.3 247 72.1
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.6e-87 325.1 243 70.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 6.0e-87 324.7 247 70.4
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 7.8e-87 324.3 240 71.7
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.9e-86 322.0 231 71.4
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.9e-86 322.0 240 71.7
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.1e-86 321.6 246 69.5
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 6.6e-86 321.2 240 71.2
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 6.6e-86 321.2 243 69.5
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 8.7e-86 320.9 243 69.1
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 8.7e-86 320.9 245 66.9
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.1e-85 320.5 222 74.8
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.9e-85 319.7 237 70.5
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.5e-85 319.3 236 70.3
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 9.6e-85 317.4 244 67.6
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 9.6e-85 317.4 243 70.0
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.6e-84 316.6 251 65.7
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.8e-84 315.8 231 70.6
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.8e-84 315.8 231 70.6
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 4.8e-84 315.1 242 67.8
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.1e-83 313.9 243 69.1
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.4e-83 312.8 245 65.3
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 4.0e-83 312.0 232 70.3
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 3.4e-82 308.9 244 67.6
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 4.4e-82 308.5 246 65.9
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.3e-81 307.0 240 69.2
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 2.4e-80 302.8 250 67.6
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 4.2e-80 302.0 214 75.2
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 5.4e-80 301.6 257 64.6
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 5.4e-80 301.6 230 71.3
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 4.6e-79 298.5 197 76.6
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.9e-77 293.1 240 64.2
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 4.3e-77 292.0 276 58.7
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 4.3e-77 292.0 247 65.6
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 9.6e-77 290.8 248 66.9
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 3.6e-76 288.9 272 59.9
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 4.8e-76 288.5 252 64.7
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.4e-75 287.0 247 64.0
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.4e-75 287.0 247 64.0
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.4e-75 286.2 251 64.5
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 5.3e-75 285.0 269 56.5
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 5.3e-75 285.0 249 63.5
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 5.3e-75 285.0 249 63.5
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.2e-74 283.9 255 62.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.0e-74 283.1 247 63.6
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 7.6e-74 281.2 214 68.2
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 8.4e-73 277.7 237 63.7
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 8.4e-73 277.7 215 69.3
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.9e-72 276.6 276 56.2
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.2e-72 275.8 204 69.6
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.6e-71 273.5 266 56.0
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 3.5e-71 272.3 299 54.8
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.5e-71 272.3 242 59.9
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 6.0e-71 271.6 268 59.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 6.0e-71 271.6 174 79.3
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 6.0e-71 271.6 215 68.8
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 7.9e-71 271.2 258 62.0
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 7.9e-71 271.2 242 59.9
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.3e-70 269.6 252 59.5
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.3e-70 269.6 239 64.4
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.0e-70 269.2 235 61.7
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 6.7e-70 268.1 274 56.6
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 8.7e-70 267.7 210 67.6
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.1e-69 267.3 265 59.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.9e-69 266.5 248 62.9
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 7.4e-69 264.6 254 60.2
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 2.8e-68 262.7 257 59.1
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.1e-67 260.8 238 62.6
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.8e-67 260.0 251 59.4
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 3.1e-67 259.2 177 78.0
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.0e-66 256.5 260 54.6
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.6e-66 256.1 250 58.0
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.7e-65 253.4 282 53.9
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 3.8e-65 252.3 218 63.3
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 6.5e-65 251.5 201 67.2
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.2e-64 248.8 258 57.0
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 9.3e-64 247.7 246 57.3
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.3e-62 243.8 256 55.1
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.8e-62 243.4 257 55.3
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 3.0e-62 242.7 261 54.8
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.0e-62 242.7 174 74.7
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 6.7e-62 241.5 264 54.5
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 8.7e-62 241.1 229 59.8
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 8.7e-62 241.1 264 54.5
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-61 240.7 264 54.5
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.1e-61 240.7 264 54.5
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.9e-61 240.0 224 59.8
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 7.4e-61 238.0 243 55.1
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.1e-60 236.5 201 60.7
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 8.2e-60 234.6 201 60.2
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.1e-59 234.2 222 57.7
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.4e-59 233.8 249 56.2
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 2.4e-59 233.0 220 58.2
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 4.5e-58 228.8 192 59.9
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 2.9e-57 226.1 249 55.4
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.4e-56 223.8 218 59.2
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.9e-56 223.4 194 63.4
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 5.5e-56 221.9 195 58.5
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 7.9e-55 218.0 261 51.3
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.3e-54 217.2 269 48.7
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 3.9e-54 215.7 264 51.5
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 6.7e-54 214.9 264 50.4
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.9e-53 213.4 267 47.9
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 7.4e-53 211.5 264 50.8
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.6e-52 210.3 229 54.6
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.8e-51 206.8 178 61.8
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.6e-50 203.0 200 60.0
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 7.7e-50 201.4 208 51.0
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.2e-47 194.1 200 55.0
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 3.6e-47 192.6 162 60.5
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 3.0e-46 189.5 136 78.7
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 5.1e-46 188.7 201 57.7
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 5.1e-46 188.7 176 61.9
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.3e-45 186.0 172 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.2e-44 183.3 173 54.3
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.2e-44 183.3 256 44.5
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.8e-44 183.0 114 70.2
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.8e-44 183.0 136 74.3
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.8e-44 183.0 173 56.6
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 6.3e-44 181.8 185 51.9
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 7.7e-42 174.9 131 72.5
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 4.2e-40 169.1 140 69.3
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 8.8e-38 161.4 199 50.3
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 5.3e-35 152.1 139 56.1
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.2e-34 151.0 153 59.5
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.6e-34 150.6 130 60.0
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 7.7e-34 148.3 160 55.0
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 8.5e-33 144.8 107 62.6
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.9e-32 143.7 146 62.3
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 2.5e-32 143.3 184 44.6
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.2e-32 142.5 101 67.3
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 1.4e-30 137.5 68 97.1
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.3e-30 136.7 130 64.6
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.0e-30 136.3 137 64.2
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 8.2e-28 128.3 267 39.0
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 5.5e-24 115.5 247 40.1
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.7e-23 113.2 147 53.1
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 3.0e-22 109.8 86 54.7
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 4.0e-22 109.4 88 56.8
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 5.2e-22 109.0 101 58.4
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 6.8e-22 108.6 114 44.7
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 2.0e-21 107.1 171 39.2
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 4.4e-21 105.9 133 54.1
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 5.4e-19 99.0 79 63.3
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 7.7e-18 95.1 97 62.9
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.0e-17 94.7 87 60.9
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 2.7e-15 86.7 118 43.2
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 4.7e-15 85.9 68 60.3
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 4.7e-15 85.9 102 56.9
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.0e-14 83.2 69 62.3
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 6.3e-12 75.5 48 62.5
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.8e-11 73.9 67 55.2
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.1e-08 64.7 50 54.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 1.0e-06 58.2 51 47.1
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-06 57.8 90 40.0
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 1.4e-06 57.8 90 40.0
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 3.0e-06 56.6 102 32.4
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 6.8e-06 55.5 34 64.7


User provided reference genes

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