Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 4.1e-234 814.3 402 100.0
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.7e-232 808.9 402 99.3
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 5.6e-223 777.3 402 94.0
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 7.3e-223 776.9 402 94.0
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 1.3e-222 776.2 402 93.0
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 2.1e-222 775.4 402 93.5
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 3.6e-222 774.6 402 93.0
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 93.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.2e-220 769.6 402 92.5
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.5e-220 769.2 402 93.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 1.5e-220 769.2 402 92.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.5
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.5
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 7.6e-220 766.9 402 91.8
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 7.6e-220 766.9 401 91.8
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 92.0
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 92.0
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 92.0
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 92.0
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.2e-219 765.4 402 92.3
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 4.9e-219 764.2 402 91.8
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.5
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 93.0
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 92.8
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 91.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 91.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.5
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 90.5
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 91.0
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 91.3
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 90.8
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 91.3
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 91.0
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.5
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 91.0
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 91.0
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 91.5
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 91.0
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 90.8
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 91.3
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.5
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.8
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.8
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 89.6
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 90.3
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.3
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.6
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 90.0
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.6
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.6
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 90.0
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 90.0
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 90.5
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.8
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 88.8
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 90.0
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 88.6
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 3.1e-213 745.0 416 87.5
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 90.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 90.3
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.6
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.6
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 1.5e-212 742.7 416 87.3
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 89.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 89.8
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 88.3
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.6
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.1
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 3.8e-211 738.0 402 87.8
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.6
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 88.1
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 87.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 88.3
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.6
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 87.3
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 3.5e-209 731.5 411 86.4
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.6
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 6.0e-209 730.7 402 87.3
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 86.6
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 87.8
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 86.8
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.1e-207 726.5 417 84.9
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.5e-207 726.1 402 87.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.5e-207 726.1 429 83.4
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 4.3e-207 724.5 402 86.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 86.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 2.1e-206 722.2 402 86.6
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 2.1e-206 722.2 402 86.6
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 8.1e-206 720.3 438 81.1
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 1.1e-205 719.9 441 81.4
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.4e-205 719.5 402 85.8
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.4e-205 718.8 402 85.1
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 85.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 85.1
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 5.3e-205 717.6 402 86.3
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 5.3e-205 717.6 402 86.3
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 5.3e-205 717.6 402 86.3
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 6.9e-205 717.2 402 86.1
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 6.9e-205 717.2 402 86.1
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 9.0e-205 716.8 402 84.6
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.2e-204 716.5 402 85.8
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 2.0e-204 715.7 396 86.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 3.4e-204 714.9 402 85.6
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 4.5e-204 714.5 419 85.2
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 4.9e-203 711.1 402 84.8
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 4.9e-203 711.1 402 84.8
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 4.9e-203 711.1 402 85.1
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 6.5e-203 710.7 401 85.0
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 6.5e-203 710.7 402 86.8
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.1e-202 709.9 402 86.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 1.4e-202 709.5 402 84.6
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 1.4e-202 709.5 402 84.6
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 1.4e-202 709.5 402 84.6
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.5e-202 708.8 400 83.8
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.5e-202 708.8 402 84.8
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 7.1e-202 707.2 402 83.8
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 1.6e-201 706.1 402 82.1
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 2.5e-199 698.7 402 83.8
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.6e-198 696.0 402 85.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 6.9e-197 690.6 375 88.5
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 8.7e-192 673.7 357 89.6
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 80.1
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 79.9
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 6.9e-189 664.1 360 88.1
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 1.2e-188 663.3 402 78.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.0e-188 662.5 361 89.8
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 5.9e-188 661.0 402 79.1
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 4.1e-181 638.3 402 78.9
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 5.0e-179 631.3 334 91.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 9.4e-178 627.1 401 73.6
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.3e-176 622.5 340 88.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 5.7e-175 617.8 402 71.4
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.7e-175 617.8 402 72.4
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 4.5e-172 608.2 402 70.9
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 5.0e-171 604.7 402 75.1
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.5e-170 602.4 403 70.2
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.2e-170 602.1 403 70.0
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.7e-163 579.7 401 67.6
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 3.2e-162 575.5 402 68.7
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.0e-155 553.9 403 65.3
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 4.7e-153 545.0 289 91.3
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.6e-143 512.7 403 67.0
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 5.4e-141 505.0 419 63.7
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 2.6e-135 486.1 402 62.7
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 5.2e-128 461.8 259 84.6
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 9.5e-122 441.0 394 54.8
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.3e-115 419.9 395 53.7
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 1.1e-114 417.5 295 71.5
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 7.6e-103 378.3 229 81.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 3.8e-102 375.9 219 85.4
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.4e-101 374.0 219 84.5
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 3.2e-101 372.9 219 83.6
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.8e-83 313.9 300 54.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.3e-82 309.3 160 91.2
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 9.0e-80 301.6 165 87.3
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.5e-53 213.8 116 87.9
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.1e-32 145.2 86 80.2
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 5.0e-30 136.3 351 28.2
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.9e-29 134.4 352 27.0
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.9e-16 91.3 47 87.2
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 3.0e-14 84.0 45 77.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.2e-12 78.6 72 56.9
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 6.2e-12 76.3 318 23.9
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 1.3e-06 58.5 355 21.7


User provided reference genes

Program Settings