Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 2.6e-239 831.6 424 100.0
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 6.1e-212 740.7 455 85.5
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 7.5e-194 680.6 408 84.6
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 3.2e-184 648.7 377 84.9
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 7.1e-184 647.5 401 83.3
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 6.0e-183 644.4 377 85.1
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 5.1e-182 641.3 400 80.5
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.9e-181 639.4 382 82.7
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 7.3e-181 637.5 404 79.7
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 9.6e-181 637.1 394 81.2
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 1.6e-180 636.3 380 83.4
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 2.4e-179 632.5 377 83.8
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 4.4e-178 628.2 395 80.0
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 9.9e-178 627.1 377 83.3
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.3e-177 626.7 377 82.5
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.8e-177 625.2 390 80.0
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 6.4e-177 624.4 399 78.7
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.9e-176 622.9 377 83.0
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.4e-176 622.5 377 81.7
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 2.4e-176 622.5 377 81.4
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.2e-176 622.1 393 78.9
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 5.4e-176 621.3 376 82.2
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.1e-175 619.4 376 81.9
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.7e-175 619.0 376 82.4
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 7.8e-175 617.5 377 81.4
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.0e-174 617.1 408 75.2
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.3e-174 616.7 395 79.0
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.3e-174 615.9 391 79.5
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 3.9e-174 615.1 377 80.4
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 3.9e-174 615.1 377 80.4
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 6.6e-174 614.4 377 80.9
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 8.7e-174 614.0 377 78.8
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.5e-173 613.2 376 80.9
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 1.3e-172 610.1 393 78.1
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.6e-172 609.8 378 81.2
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.6e-172 608.6 378 81.0
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 3.6e-172 608.6 386 78.2
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 4.8e-172 608.2 393 77.1
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 4.8e-172 608.2 395 77.2
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 6.2e-172 607.8 373 80.2
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.4e-171 605.9 373 80.2
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 3.1e-171 605.5 372 80.6
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 6.9e-171 604.4 395 76.5
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 9.0e-171 604.0 398 76.1
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 2.0e-170 602.8 386 76.9
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 3.4e-170 602.1 397 75.8
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 3.8e-169 598.6 372 79.8
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 8.4e-169 597.4 388 77.6
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 5.4e-168 594.7 388 76.5
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.2e-167 593.6 424 71.7
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.1e-167 592.8 385 76.9
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 2.1e-167 592.8 384 76.3
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 2.7e-167 592.4 390 75.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 3.5e-167 592.0 373 78.8
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 7.9e-167 590.9 377 77.2
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.3e-166 590.1 383 76.2
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.8e-166 589.7 399 74.4
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 3.0e-166 589.0 397 72.5
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.9e-166 588.6 373 76.4
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 3.9e-166 588.6 391 73.9
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 5.1e-166 588.2 374 79.1
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 8.7e-166 587.4 374 78.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.1e-165 587.0 422 71.8
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.1e-165 587.0 384 75.5
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.5e-165 586.6 384 75.3
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.9e-165 586.3 384 76.0
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.6e-164 583.2 397 72.3
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 6.2e-164 581.3 377 75.1
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 6.2e-164 581.3 378 75.4
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.1e-163 580.5 404 70.5
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.4e-163 580.1 404 70.3
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.2e-162 577.0 377 74.3
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 2.0e-162 576.2 359 79.4
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 5.8e-162 574.7 403 73.4
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 9.9e-162 573.9 361 78.1
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.9e-160 569.7 361 77.3
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 4.2e-160 568.5 374 74.1
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 3.5e-159 565.5 404 69.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 4.6e-159 565.1 404 69.8
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 6.0e-159 564.7 375 74.1
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 7.9e-159 564.3 350 79.1
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 8.7e-158 560.8 404 69.3
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 8.7e-158 560.8 404 69.3
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.5e-157 560.1 382 72.0
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 6.2e-156 554.7 370 72.7
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.5e-154 550.1 377 73.5
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 5.8e-154 548.1 383 69.5
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 4.6e-151 538.5 557 55.3
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.0e-150 537.3 392 67.3
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.5e-149 532.7 385 71.4
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 5.3e-147 525.0 372 71.2
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.6e-146 522.7 359 72.7
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 5.9e-146 521.5 414 67.9
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.2e-144 515.8 314 81.5
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 7.2e-144 514.6 373 67.3
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.0e-142 510.8 398 63.6
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 5.1e-142 508.4 331 75.5
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.7e-140 502.3 327 74.0
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.1e-139 500.7 301 82.7
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 3.1e-139 499.2 329 76.0
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.2e-135 487.3 385 66.5
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.8e-134 483.4 396 60.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 2.2e-132 476.5 384 62.0
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.1e-131 474.2 334 76.0
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.1e-128 464.2 336 68.8
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.5e-120 437.2 327 68.5
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 3.3e-117 426.0 369 55.8
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.2e-111 407.5 263 77.2
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 8.0e-111 404.8 266 76.3
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.4e-109 399.4 277 70.4
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 3.6e-103 379.4 328 62.5
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 5.2e-102 375.6 317 59.6
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.3e-97 360.9 228 78.1
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 4.7e-95 352.4 388 49.5
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 5.4e-91 339.0 377 48.0
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 9.8e-85 318.2 381 45.9
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 3.4e-61 240.0 239 55.6
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 7.6e-61 238.8 252 50.8
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 4.6e-58 229.6 151 72.2
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.0e-54 216.5 143 76.2
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.4e-46 191.4 160 59.4
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-46 191.0 167 56.9
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.8e-46 191.0 314 36.3
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.5e-45 186.4 110 84.5
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 5.1e-41 172.9 103 83.5
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.7e-36 157.9 142 59.2
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 4.1e-30 136.7 421 31.6
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.5e-29 134.8 121 60.3
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 3.2e-27 127.1 84 71.4
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.0e-25 120.6 95 66.3
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 8.8e-25 119.0 87 72.4
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.8e-20 103.6 64 71.9
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.7e-15 87.0 90 52.2
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 3.1e-14 84.0 79 58.2
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.5e-13 81.6 49 73.5
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.2e-11 73.9 62 59.7
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 4.4e-08 63.5 66 48.5
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 1.3e-07 62.0 42 64.3
CBR_g3871 Chara braunii HOM05D005532 ORTHO05D006873 2.4e-06 57.8 99 36.4


User provided reference genes

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