Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1948.3 934 100.0
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1739.2 925 91.4
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1590.5 946 81.3
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1426.0 949 70.2
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1420.6 949 70.3
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1417.1 946 70.6
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1409.8 951 71.1
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1407.1 951 71.0
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1404.8 951 70.9
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1401.7 950 70.7
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1399.0 960 70.9
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1388.2 973 69.2
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1376.7 949 69.1
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1374.8 937 69.7
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1363.6 949 68.7
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1352.8 934 68.1
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1349.0 946 68.2
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1333.2 943 66.9
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1323.1 916 68.6
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1318.1 944 66.2
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1299.3 995 64.1
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1285.0 941 65.9
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1283.1 941 65.8
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1278.8 910 67.5
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1276.9 816 73.7
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1267.7 842 70.8
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1266.9 947 63.0
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 0.0e+00 1256.9 745 80.7
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1256.1 947 62.7
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1248.8 950 64.2
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1246.9 849 70.0
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1243.0 938 63.8
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1236.1 891 65.3
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1234.9 927 62.1
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1228.8 940 63.5
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1223.0 948 61.7
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1221.5 939 62.2
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1215.3 938 61.5
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1209.5 951 62.3
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1200.7 940 62.1
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 0.0e+00 1198.0 944 62.6
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1196.0 940 62.3
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1193.7 938 59.8
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1174.1 912 60.3
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 0.0e+00 1173.3 940 60.4
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1172.9 856 64.6
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1171.8 943 60.1
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1169.5 787 69.3
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1169.1 947 60.6
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1166.0 926 61.3
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1156.4 910 60.1
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 0.0e+00 1147.5 942 60.0
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 0.0e+00 1140.6 948 57.8
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 0.0e+00 1137.9 942 59.9
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 0.0e+00 1136.7 915 59.0
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 0.0e+00 1130.2 712 74.6
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 0.0e+00 1126.7 942 58.9
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 0.0e+00 1122.8 918 61.1
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1121.3 902 59.2
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 0.0e+00 1116.3 945 59.6
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 0.0e+00 1107.0 943 57.6
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1100.9 918 58.9
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 0.0e+00 1096.6 903 58.4
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 0.0e+00 1096.3 943 57.8
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 0.0e+00 1093.2 943 57.6
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1091.6 947 56.2
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 0.0e+00 1078.2 865 59.3
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 0.0e+00 1076.6 902 57.3
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 2.6e-311 1072.0 904 56.6
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.2e-308 1063.1 813 62.0
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.2e-308 1063.1 813 62.0
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 7.7e-308 1060.4 902 56.8
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 7.7e-308 1060.4 904 55.9
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.4e-301 1039.6 746 65.4
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 3.1e-301 1038.5 950 54.1
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 4.5e-300 1034.6 943 56.3
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 3.1e-293 1011.9 912 54.5
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 5.4e-293 1011.1 839 59.1
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 2.1e-289 999.2 884 56.1
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 1.5e-287 993.0 910 54.5
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 8.3e-286 987.3 721 65.0
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 3.5e-284 981.9 963 52.4
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 1.2e-281 973.4 904 52.3
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 9.8e-279 963.8 815 59.0
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 2.4e-277 959.1 634 70.2
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 6.0e-268 927.9 900 51.8
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.9e-266 922.9 933 49.8
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.0e-259 900.6 621 67.6
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 1.3e-254 883.6 941 51.0
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 9.7e-218 761.1 647 56.0
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 2.5e-213 746.5 485 70.5
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.0e-195 688.0 983 38.6
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.0e-194 683.7 576 55.9
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.3e-182 643.7 567 57.8
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.0e-179 632.9 472 65.3
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.7e-178 629.0 438 65.8
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 1.7e-161 574.3 506 55.9
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 5.2e-155 552.7 545 49.4
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.1e-152 543.1 407 67.6
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 1.7e-134 484.6 381 62.2
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 6.0e-127 459.5 861 32.9
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 5.3e-107 393.3 303 59.4
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.6e-90 337.8 299 60.5
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 2.0e-85 321.6 256 64.1
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 1.3e-76 292.4 284 54.2
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 5.5e-72 276.9 201 64.7
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.4e-67 261.5 280 47.5
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 3.8e-65 254.2 310 43.2
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 6.8e-54 216.9 256 46.5
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 1.1e-35 156.4 105 74.3
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 1.5e-32 146.0 158 50.0
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 5.6e-32 144.1 134 52.2
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 9.6e-32 143.3 158 50.6
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 9.6e-32 143.3 90 67.8
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 8.4e-28 130.2 204 38.7
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 3.3e-24 118.2 107 52.3
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 2.2e-20 105.5 95 55.8
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.4e-19 102.1 86 58.1
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 4.0e-14 84.7 64 57.8
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 6.9e-14 84.0 49 73.5
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 7.6e-13 80.5 54 66.7
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 8.4e-12 77.0 85 47.1
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.4e-11 76.3 53 66.0
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 3.7e-07 61.6 179 29.1


User provided reference genes

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