Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009799 Carpinus fangiana HOM05D001961 ORTHO05D010574 1.3e-64 249.6 124 100.0
Cfa009801 Carpinus fangiana HOM05D001961 ORTHO05D002286 5.1e-34 147.9 81 91.4
Cfa009804 Carpinus fangiana HOM05D001961 ORTHO05D002286 1.6e-30 136.3 81 84.0
Cfa009800 Carpinus fangiana HOM05D001961 ORTHO05D002286 1.3e-29 133.3 92 75.0
Cfa009758 Carpinus fangiana HOM05D001961 ORTHO05D002286 1.0e-13 80.5 72 59.7
Cfa021166 Carpinus fangiana HOM05D001961 ORTHO05D002286 4.2e-12 75.1 71 57.7
CAN.G999.31 Capsicum annuum HOM05D001961 ORTHO05D002286 4.0e-10 68.6 73 47.9
Nn3g17102 Nelumbo nucifera HOM05D001961 ORTHO05D002286 1.3e-08 63.5 71 46.5
Gohir.D03G090700 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.7e-08 63.2 71 43.7
Gorai.003G070500 Gossypium raimondii HOM05D001961 ORTHO05D002286 1.7e-08 63.2 71 43.7
Solyc03g113370.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 1.7e-08 63.2 71 45.1
Sopen03g032420 Solanum pennellii HOM05D001961 ORTHO05D002286 1.7e-08 63.2 71 45.1
Dinv38651 Davidia involucrata HOM05D001961 ORTHO05D002286 2.2e-08 62.8 71 45.1
Oeu020375.1 Olea europaea HOM05D001961 ORTHO05D002286 2.2e-08 62.8 71 45.1
ClCG06G016460 Citrullus lanatus HOM05D001961 ORTHO05D002286 3.7e-08 62.0 71 46.5
Migut.I00114 Erythranthe guttata HOM05D001961 ORTHO05D002286 3.7e-08 62.0 71 45.1
MBI04_g20669_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 4.9e-08 61.6 72 45.8
Potri.012G071900 Populus trichocarpa HOM05D001961 ORTHO05D002286 4.9e-08 61.6 71 45.1
SGA_v2.0_scaffold114G31883 Striga asiatica HOM05D001961 ORTHO05D002286 4.9e-08 61.6 71 46.5
EL10Ac5g10921 Beta vulgaris HOM05D001961 ORTHO05D002286 6.3e-08 61.2 74 40.5
PGSC0003DMG400013181 Solanum tuberosum HOM05D001961 ORTHO05D002286 6.3e-08 61.2 71 43.7
CARHR156630 Cardamine hirsuta HOM05D001961 ORTHO05D002286 8.3e-08 60.8 78 46.2
CsaV3_1G002070 Cucumis sativus L. HOM05D001961 ORTHO05D002286 8.3e-08 60.8 71 43.7
Gohir.A03G064400 Gossypium hirsutum HOM05D001961 ORTHO05D002286 8.3e-08 60.8 71 42.3
Oeu039544.2 Olea europaea HOM05D001961 ORTHO05D002286 8.3e-08 60.8 71 45.1
Gohir.A11G028810 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.1e-07 60.5 71 45.1
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.1e-07 60.5 71 45.1
Gorai.007G034900 Gossypium raimondii HOM05D001961 ORTHO05D002286 1.1e-07 60.5 71 45.1
Sed0025522 Sechium edule HOM05D001961 ORTHO05D002286 1.1e-07 60.5 71 43.7
Actinidia34975 Actinidia chinensis HOM05D001961 ORTHO05D002286 1.4e-07 60.1 71 43.7
AUR62008343 Chenopodium quinoa HOM05D001961 ORTHO05D002286 1.4e-07 60.1 85 44.7
AUR62021754 Chenopodium quinoa HOM05D001961 ORTHO05D002286 1.4e-07 60.1 71 47.9
Cc04_g15870 Coffea canephora HOM05D001961 ORTHO05D002286 1.4e-07 60.1 71 43.7
Haze_05897 Corylus avellana HOM05D001961 ORTHO05D002286 1.4e-07 60.1 74 40.5
Hma1.2p1_0002F.1_g003390 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 1.4e-07 60.1 71 42.3
TWI81G0197 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.4e-07 60.1 71 43.7
HPP92_023511 Vanilla planifolia HOM05D001961 ORTHO05D002286 1.4e-07 60.1 72 43.1
HPP92_023556 Vanilla planifolia HOM05D001961 ORTHO05D002286 1.4e-07 60.1 72 43.1
Migut.I00115 Erythranthe guttata HOM05D001961 ORTHO05D002286 1.8e-07 59.7 71 42.3
SGA_v2.0_scaffold7G04090 Striga asiatica HOM05D001961 ORTHO05D002286 1.8e-07 59.7 71 46.5
TWI15G0443 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.8e-07 59.7 71 43.7
MELO3C017148.2 Cucumis melo HOM05D001961 ORTHO05D002286 2.4e-07 59.3 71 42.3
DCAR_021541 Daucus carota HOM05D001961 ORTHO05D002286 2.4e-07 59.3 71 45.1
Peaxi162Scf00689g00564 Petunia axillaris HOM05D001961 ORTHO05D002286 2.4e-07 59.3 71 43.7
PGR083G2262 Punica granatum HOM05D001961 ORTHO05D002286 2.4e-07 59.3 71 43.7
Sabra12G0051100 Salix brachista HOM05D001961 ORTHO05D002286 2.4e-07 59.3 71 43.7
TWI60G1556 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 2.4e-07 59.3 71 43.7
vmacro19421 Vaccinium macrocarpon HOM05D001961 ORTHO05D002286 2.4e-07 59.3 71 43.7
Aa31LG11G1000 Aethionema arabicum HOM05D001961 ORTHO05D002286 3.1e-07 58.9 71 45.1
Duzib068G1318 Durio zibethinus HOM05D001961 ORTHO05D002286 3.1e-07 58.9 71 42.3
Nitab4.5_0000909g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 3.1e-07 58.9 71 43.7
PGSC0003DMG400033067 Solanum tuberosum HOM05D001961 ORTHO05D002286 3.1e-07 58.9 71 42.3
arahy.Tifrunner.gnm1.ann1.DV6TYS Arachis hypogaea HOM05D001961 ORTHO05D002286 4.1e-07 58.5 77 40.3
arahy.Tifrunner.gnm1.ann1.LMB17M Arachis hypogaea HOM05D001961 ORTHO05D002286 4.1e-07 58.5 77 40.3
CSS0014551 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 4.1e-07 58.5 71 43.7
CSS0045618 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 4.1e-07 58.5 71 43.7
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 4.1e-07 58.5 71 42.3
MSTRG.11404 Avicennia marina HOM05D001961 ORTHO05D002286 5.4e-07 58.2 71 42.3
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 5.4e-07 58.2 71 42.3
MBI01_g01232_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 5.4e-07 58.2 72 44.4
Nitab4.5_0000003g0050 Nicotiana tabacum HOM05D001961 ORTHO05D002286 5.4e-07 58.2 71 42.3
SalBow5G1786 Salvia bowleyana HOM05D001961 ORTHO05D002286 5.4e-07 58.2 71 40.8
TAR374G1240 Trochodendron aralioides HOM05D001961 ORTHO05D002286 5.4e-07 58.2 71 40.8
COL.COLO4_35465 Corchorus olitorius HOM05D001961 ORTHO05D002286 7.0e-07 57.8 71 40.8
Eucgr.B00398 Eucalyptus grandis HOM05D001961 ORTHO05D002286 7.0e-07 57.8 71 42.3
PSO591G0439 Papaver somniferum HOM05D001961 ORTHO05D002286 7.0e-07 57.8 71 40.8
PSO832G1192 Papaver somniferum HOM05D001961 ORTHO05D002286 7.0e-07 57.8 71 40.8
Atru.chr9.2337 Acer truncatum HOM05D001961 ORTHO05D002286 9.2e-07 57.4 77 40.3
CANSAT80G1878 Cannabis sativa HOM05D001961 ORTHO05D002286 9.2e-07 57.4 71 43.7
Haze_05891 Corylus avellana HOM05D001961 ORTHO05D002286 9.2e-07 57.4 74 40.5
FAN08G2604 Fragaria x ananassa HOM05D001961 ORTHO05D002286 9.2e-07 57.4 76 44.7
FAN13G0464 Fragaria x ananassa HOM05D001961 ORTHO05D002286 9.2e-07 57.4 76 44.7
FAN18G4418 Fragaria x ananassa HOM05D001961 ORTHO05D002286 9.2e-07 57.4 76 44.7
Lj4g0028007 Lotus japonicus HOM05D001961 ORTHO05D002286 9.2e-07 57.4 72 41.7
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 9.2e-07 57.4 76 44.7
Solyc06g071120.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 9.2e-07 57.4 71 40.8
Sopen06g027420 Solanum pennellii HOM05D001961 ORTHO05D002286 9.2e-07 57.4 71 40.8
Aqoxy3G03236 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 1.2e-06 57.0 71 42.3
AL5G27220 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 1.2e-06 57.0 71 40.8
CAN.G628.49 Capsicum annuum HOM05D001961 ORTHO05D002286 1.2e-06 57.0 71 42.3
Cfa009760 Carpinus fangiana HOM05D001961 ORTHO05D002286 1.2e-06 57.0 66 50.0
FvH4_5g15740 Fragaria vesca HOM05D001961 ORTHO05D002286 1.2e-06 57.0 71 43.7
Peaxi162Scf00009g00524 Petunia axillaris HOM05D001961 ORTHO05D002286 1.2e-06 57.0 71 39.4
Rhsim08G0161300 Rhododendron simsii HOM05D001961 ORTHO05D002286 1.2e-06 57.0 71 40.8
Carub.0005s1403 Capsella rubella HOM05D001961 ORTHO05D002286 1.6e-06 56.6 71 40.8
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 1.6e-06 56.6 71 43.7
Actinidia37665 Actinidia chinensis HOM05D001961 ORTHO05D002286 2.0e-06 56.2 71 40.8
Ah.02g113120 Amaranthus hybridus HOM05D001961 ORTHO05D002286 2.0e-06 56.2 71 45.1
Cfa011655 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.0e-06 56.2 114 31.6
Thhalv10010059m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 2.0e-06 56.2 73 39.7
FAN04G1134 Fragaria x ananassa HOM05D001961 ORTHO05D002286 2.0e-06 56.2 76 43.4
Lj5C117T8 Lonicera japonica HOM05D001961 ORTHO05D002286 2.0e-06 56.2 71 42.3
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 2.0e-06 56.2 71 39.4
Duzib205G1945 Durio zibethinus HOM05D001961 ORTHO05D002286 2.7e-06 55.8 71 39.4
Nn4g23006 Nelumbo nucifera HOM05D001961 ORTHO05D002286 2.7e-06 55.8 71 42.3
Potri.015G066500 Populus trichocarpa HOM05D001961 ORTHO05D002286 2.7e-06 55.8 71 40.8
Haze_07394 Corylus avellana HOM05D001961 ORTHO05D002286 3.5e-06 55.5 71 43.7
Oeu022639.1 Olea europaea HOM05D001961 ORTHO05D002286 3.5e-06 55.5 83 38.6
Hund09373 Selenicereus undatus HOM05D001961 ORTHO05D002286 3.5e-06 55.5 71 36.6
THA.LOC104821450 Tarenaya hassleriana HOM05D001961 ORTHO05D002286 3.5e-06 55.5 71 40.8
MD06G1185800 Malus domestica HOM05D001961 ORTHO05D002286 4.5e-06 55.1 76 42.1
PSO478G4671 Papaver somniferum HOM05D001961 ORTHO05D002286 4.5e-06 55.1 71 39.4
Sc04g0002330 Simmondsia chinensis HOM05D001961 ORTHO05D002286 4.5e-06 55.1 71 39.4
AT3G47890 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 5.9e-06 54.7 71 39.4
BcaB02g10685 Brassica carinata HOM05D001961 ORTHO05D002286 5.9e-06 54.7 71 40.8
Cfa000802 Carpinus fangiana HOM05D001961 ORTHO05D002286 5.9e-06 54.7 74 40.5
Lalb_Chr13g0298141 Lupinus albus HOM05D001961 ORTHO05D002286 5.9e-06 54.7 78 35.9
PSO161G0075 Papaver somniferum HOM05D001961 ORTHO05D002286 5.9e-06 54.7 71 39.4
Prupe.5G184600 Prunus persica HOM05D001961 ORTHO05D002286 5.9e-06 54.7 71 39.4
Aa31LG4G16560 Aethionema arabicum HOM05D001961 ORTHO05D002286 7.7e-06 54.3 71 42.3
Lsat_1_v5_gn_1_11560 Lactuca sativa HOM05D001961 ORTHO05D002286 7.7e-06 54.3 108 34.3
SalBow7G0691 Salvia bowleyana HOM05D001961 ORTHO05D002286 7.7e-06 54.3 71 39.4


User provided reference genes

Program Settings