Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009749 Carpinus fangiana HOM05D000001 ORTHO05D123658 2.0e-64 248.8 117 100.0
Cfa009751 Carpinus fangiana HOM05D000001 ORTHO05D000003 6.4e-26 120.9 70 84.3
Haze_23113 Corylus avellana HOM05D000001 ORTHO05D000003 3.2e-25 118.6 70 81.4
Haze_23116 Corylus avellana HOM05D000001 ORTHO05D000003 3.2e-25 118.6 70 81.4
CiPaw.14G120800 Carya illinoinensis HOM05D000001 ORTHO05D000003 3.1e-20 102.1 70 70.0
MD03G1178400 Malus domestica HOM05D000001 ORTHO05D000003 4.4e-19 98.2 69 63.8
Prupe.4G244500 Prunus persica HOM05D000001 ORTHO05D000003 1.3e-18 96.7 69 65.2
Manes.06G165900 Manihot esculenta HOM05D000001 ORTHO05D000003 1.7e-18 96.3 69 62.3
QL01p005134 Quercus lobata HOM05D000001 ORTHO05D000003 1.2e-16 90.1 70 65.7
Sed0003087 Sechium edule HOM05D000001 ORTHO05D000003 6.0e-16 87.8 70 60.0
ClCG03G013360 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.3e-15 86.7 70 61.4
MELO3C015205.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.3e-15 86.7 70 60.0
RcHm_v2.0_Chr5g0051471 Rosa chinensis HOM05D000001 ORTHO05D000003 3.0e-15 85.5 69 59.4
Hma1.2p1_0027F.1_g017140 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 5.1e-15 84.7 71 56.3
Eucgr.J00784 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.6e-15 84.3 72 56.9
Ciclev10017659m.g Citrus clementina HOM05D000001 ORTHO05D000003 8.6e-15 84.0 69 56.5
Potri.001G019500 Populus trichocarpa HOM05D000001 ORTHO05D000003 8.6e-15 84.0 69 58.0
Atru.chr3.2610 Acer truncatum HOM05D000001 ORTHO05D000003 1.5e-14 83.2 70 55.7
FvH4_3g29070 Fragaria vesca HOM05D000001 ORTHO05D000003 1.5e-14 83.2 69 58.0
FAN11G0536 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-14 83.2 69 58.0
Aqoxy1G00200 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.9e-14 82.8 69 55.1
Duzib150G0284 Durio zibethinus HOM05D000001 ORTHO05D000003 1.9e-14 82.8 74 52.7
Nn7g36149 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.9e-14 82.8 72 56.9
TAR633G2774 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.9e-14 82.8 69 58.0
FAN21G1706 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.5e-14 82.4 69 56.5
Thecc.09G229300 Theobroma cacao HOM05D000001 ORTHO05D000003 2.5e-14 82.4 70 54.3
CANSAT11G1432 Cannabis sativa HOM05D000001 ORTHO05D000003 3.3e-14 82.0 69 58.0
CsaV3_1G042690 Cucumis sativus L. HOM05D000001 ORTHO05D000003 5.6e-14 81.3 70 58.6
vmacro04189 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 5.6e-14 81.3 69 58.0
GSVIVG01025295001 Vitis vinifera HOM05D000001 ORTHO05D000003 5.6e-14 81.3 69 53.6
Rhsim13G0222900 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.3e-14 80.9 69 55.1
PGR119G1889 Punica granatum HOM05D000001 ORTHO05D000003 1.2e-13 80.1 72 52.8
Lsat_1_v5_gn_6_46361 Lactuca sativa HOM05D000001 ORTHO05D000003 2.1e-13 79.3 73 54.8
THA.LOC104817904 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 2.1e-13 79.3 69 56.5
Dinv22189 Davidia involucrata HOM05D000001 ORTHO05D000003 2.8e-13 79.0 69 56.5
Gohir.A10G237650 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.8e-13 79.0 81 49.4
CSS0013791 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 8.1e-13 77.4 70 54.3
Aa31LG10G3480 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.1e-12 77.0 70 54.3
CSS0020049 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.1e-12 77.0 70 54.3
Lalb_Chr12g0208151 Lupinus albus HOM05D000001 ORTHO05D000003 1.1e-12 77.0 65 53.8
Glyma.01G139700 Glycine max HOM05D000001 ORTHO05D000003 1.4e-12 76.6 53 62.3
CAN.G31.20 Capsicum annuum HOM05D000001 ORTHO05D000003 1.8e-12 76.3 52 59.6
Lj1P345T12 Lonicera japonica HOM05D000001 ORTHO05D000003 3.1e-12 75.5 72 52.8
Gohir.D10G249400 Gossypium hirsutum HOM05D000001 ORTHO05D000003 4.0e-12 75.1 81 48.1
Gorai.011G289700 Gossypium raimondii HOM05D000001 ORTHO05D000003 4.0e-12 75.1 81 48.1
AT2G22410 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 6.8e-12 74.3 76 47.4
Sp1g37970 Schrenkiella parvula HOM05D000001 ORTHO05D000003 6.8e-12 74.3 70 51.4
Actinidia16320 Actinidia chinensis HOM05D000001 ORTHO05D000003 8.9e-12 73.9 69 53.6
AL4G11910 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 8.9e-12 73.9 76 46.1
Carub.0004s0157 Capsella rubella HOM05D000001 ORTHO05D000003 1.2e-11 73.6 86 44.2
Thhalv10011276m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 1.2e-11 73.6 69 50.7
Sc09g0000620 Simmondsia chinensis HOM05D000001 ORTHO05D000003 1.5e-11 73.2 72 50.0
PSO782G2579 Papaver somniferum HOM05D000001 ORTHO05D000003 2.0e-11 72.8 69 50.7
Solyc11g062250.2 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.0e-11 72.8 46 69.6
EL10Ac4g10291 Beta vulgaris HOM05D000001 ORTHO05D000003 3.4e-11 72.0 69 52.2
arahy.Tifrunner.gnm1.ann1.M89JWR Arachis hypogaea HOM05D005501 ORTHO05D007485 4.4e-11 71.6 69 50.7
arahy.Tifrunner.gnm1.ann1.P03IG6 Arachis hypogaea HOM05D000001 ORTHO05D000003 4.4e-11 71.6 69 50.7
AUR62000103 Chenopodium quinoa HOM05D000001 ORTHO05D000003 4.4e-11 71.6 69 53.6
Lj3g0004149 Lotus japonicus HOM05D000001 ORTHO05D000003 4.4e-11 71.6 69 50.7
Sabra01G0013800 Salix brachista HOM05D000001 ORTHO05D000003 4.4e-11 71.6 69 50.7
HanXRQChr11g0344721 Helianthus annuus HOM05D000001 ORTHO05D000003 5.8e-11 71.2 70 51.4
PSO017G3070 Papaver somniferum HOM05D000001 ORTHO05D000003 5.8e-11 71.2 69 49.3
Nitab4.5_0002026g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 9.9e-11 70.5 52 59.6
HPP92_020391 Vanilla planifolia HOM05D000001 ORTHO05D000003 9.9e-11 70.5 68 47.1
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.3e-10 70.1 69 49.3
A05p19710 Brassica napus HOM05D000001 ORTHO05D000003 1.3e-10 70.1 70 47.1
CARHR041310 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.7e-10 69.7 76 46.1
C05p32870 Brassica napus HOM05D000001 ORTHO05D000003 2.2e-10 69.3 70 44.3
BolC5t32018H Brassica oleracea HOM05D000001 ORTHO05D000003 2.2e-10 69.3 70 44.3
TPR.G7600 Trifolium pratense HOM05D000001 ORTHO05D000003 2.2e-10 69.3 69 50.7
BcaB02g11229 Brassica carinata HOM05D000001 ORTHO05D000003 2.9e-10 68.9 70 45.7
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 2.9e-10 68.9 52 59.6
BraA05t20876Z Brassica rapa HOM05D000001 ORTHO05D000003 3.7e-10 68.6 70 45.7
Ca_19946_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.1e-09 67.0 69 49.3
BcaC05g27355 Brassica carinata HOM05D000001 ORTHO05D000003 1.4e-09 66.6 70 42.9
VMungo0331G0158 Vigna mungo HOM05D000001 ORTHO05D000003 1.9e-09 66.2 69 47.8
Ah.06g193740 Amaranthus hybridus HOM05D000001 ORTHO05D000003 2.4e-09 65.9 67 49.3
Psat7g230960 Pisum sativum HOM05D000001 ORTHO05D000003 4.1e-09 65.1 69 47.8
Cc00_g15840 Coffea canephora HOM05D000001 ORTHO05D000003 5.4e-09 64.7 70 44.3
Phvul.010G081900 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 5.4e-09 64.7 68 48.5
CDE01G0246 Ceratophyllum demersum HOM05D000008 ORTHO05D000005 1.6e-08 63.2 68 44.1
Atru.chr11.1137 Acer truncatum HOM05D000001 ORTHO05D009766 4.6e-08 61.6 53 47.2
Potri.007G073100 Populus trichocarpa HOM05D000001 ORTHO05D009766 6.0e-08 61.2 53 45.3
TAR622G0551 Trochodendron aralioides HOM05D000001 ORTHO05D009485 7.8e-08 60.8 65 41.5
TWI36G0278 Tripterygium wilfordii HOM05D000001 ORTHO05D009485 1.0e-07 60.5 52 48.1
MSTRG.17587 Avicennia marina HOM05D000001 ORTHO05D000003 1.3e-07 60.1 55 47.3
Migut.N02307 Erythranthe guttata HOM05D000001 ORTHO05D000003 2.3e-07 59.3 55 49.1
CiPaw.03G055100 Carya illinoinensis HOM05D000001 ORTHO05D000003 3.0e-07 58.9 52 50.0
Prupe.6G328300 Prunus persica HOM05D000001 ORTHO05D000003 3.0e-07 58.9 68 39.7
Sabra07G0061600 Salix brachista HOM05D000001 ORTHO05D009766 3.0e-07 58.9 51 43.1
ATR0049G050 Amborella trichopoda HOM05D000001 ORTHO05D012439 3.9e-07 58.5 55 45.5
MBI04_g06997_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.1e-07 58.2 66 40.9
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 6.6e-07 57.8 76 38.2
SGA_v2.0_scaffold42G16111 Striga asiatica HOM05D000083 ORTHO05D000196 8.6e-07 57.4 71 40.8
MBI07_g31011_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.1e-06 57.0 52 40.4
CSS0032876 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009485 1.9e-06 56.2 52 40.4
CSS0033469 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009485 1.9e-06 56.2 52 40.4
DCAR_021792 Daucus carota HOM05D000001 ORTHO05D000003 1.9e-06 56.2 52 46.2
Dinv17626 Davidia involucrata HOM05D000001 ORTHO05D009766 2.5e-06 55.8 50 44.0
TWI77G0660 Tripterygium wilfordii HOM05D000001 ORTHO05D009766 2.5e-06 55.8 51 43.1
CANSAT78G0746 Cannabis sativa HOM05D000001 ORTHO05D009766 3.3e-06 55.5 70 38.6
Lsat_1_v5_gn_9_28621 Lactuca sativa HOM05D000001 ORTHO05D000003 3.3e-06 55.5 45 46.7
Manes.13G065600 Manihot esculenta HOM05D000001 ORTHO05D009766 3.3e-06 55.5 51 41.2
RcHm_v2.0_Chr5g0043961 Rosa chinensis HOM05D000001 ORTHO05D009766 3.3e-06 55.5 65 41.5
TWI56G1071 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 3.3e-06 55.5 87 35.6
GSVIVG01033304001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.3e-06 55.5 64 32.8
Atru.chr2.3202 Acer truncatum HOM05D000001 ORTHO05D006025 4.3e-06 55.1 66 39.4
Nn6g35263 Nelumbo nucifera HOM05D000001 ORTHO05D000003 4.3e-06 55.1 55 49.1
TWI74G1394 Tripterygium wilfordii HOM05D000001 ORTHO05D009766 4.3e-06 55.1 51 41.2
Ah.06g189610 Amaranthus hybridus HOM05D000001 ORTHO05D006238 5.6e-06 54.7 55 38.2
ATR0618G430 Amborella trichopoda HOM05D000001 ORTHO05D006025 5.6e-06 54.7 53 35.8
CDE02G3983 Ceratophyllum demersum HOM05D000077 ORTHO05D000552 5.6e-06 54.7 50 42.0
MBI04_g06998_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.6e-06 54.7 66 37.9
CSS0041078 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D006238 7.3e-06 54.3 52 40.4
FvH4_3g24460 Fragaria vesca HOM05D000001 ORTHO05D009766 7.3e-06 54.3 65 41.5
FAN11G0296 Fragaria x ananassa HOM05D000001 ORTHO05D009766 7.3e-06 54.3 65 41.5
FAN16G3374 Fragaria x ananassa HOM05D000001 ORTHO05D009766 7.3e-06 54.3 65 41.5
FAN21G3791 Fragaria x ananassa HOM05D000001 ORTHO05D009766 7.3e-06 54.3 65 41.5
Manes.15G160400 Manihot esculenta HOM05D000001 ORTHO05D006025 7.3e-06 54.3 52 40.4
HPP92_015223 Vanilla planifolia HOM05D000001 ORTHO05D000003 7.3e-06 54.3 95 34.7
Cpa.g.sc0.120 Carica papaya HOM05D000001 ORTHO05D009766 9.5e-06 53.9 54 38.9
Cc05_g09520 Coffea canephora HOM05D000001 ORTHO05D006238 9.5e-06 53.9 52 42.3
TAR365G0999 Trochodendron aralioides HOM05D000001 ORTHO05D000003 9.5e-06 53.9 54 46.3


User provided reference genes

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