Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 4.2e-137 491.5 277 100.0
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.1e-128 462.6 277 93.1
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.1e-128 462.6 277 92.8
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.1e-128 462.6 277 93.5
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.1e-128 462.6 277 93.5
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 3.6e-128 461.8 277 92.8
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 6.1e-128 461.1 277 91.7
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 6.1e-128 461.1 277 93.1
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 6.1e-128 461.1 277 92.1
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 6.1e-128 461.1 277 92.8
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 6.1e-128 461.1 277 92.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.0e-128 460.7 277 90.6
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.8e-127 459.5 277 91.7
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.0e-127 458.8 277 92.8
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 6.8e-127 457.6 277 91.0
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.2e-126 456.8 277 90.6
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.5e-126 456.4 276 92.4
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.0e-126 456.1 277 91.0
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 91.0
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 91.0
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.3e-125 453.4 277 91.0
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.3e-125 453.4 277 91.0
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 90.3
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 89.9
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 89.5
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 90.6
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 89.9
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 90.6
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 88.4
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.6
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 8.3e-125 450.7 277 89.5
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 89.5
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 89.5
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 88.8
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 9.2e-124 447.2 277 89.2
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 88.4
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 89.5
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 88.8
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 3.5e-123 445.3 277 89.2
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 88.4
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 88.4
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 88.4
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.3e-122 443.4 276 88.4
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 88.4
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 88.8
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 8.6e-122 440.7 277 89.2
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 8.6e-122 440.7 277 88.1
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 86.3
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 89.5
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 87.4
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 86.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.7
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 5.6e-121 438.0 277 87.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.2e-120 436.8 278 86.7
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 86.6
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 87.7
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 86.6
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 2.8e-120 435.6 261 91.2
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 86.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 87.4
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 85.6
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.0e-119 433.7 274 86.9
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 85.6
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 4.0e-119 431.8 274 86.5
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 8.9e-119 430.6 277 87.7
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.2e-118 430.3 283 84.5
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.0e-118 429.5 301 81.4
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 5.8e-118 427.9 277 84.5
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.2e-117 426.0 321 76.6
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.2e-117 426.0 277 86.3
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.4e-116 423.3 277 87.4
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 7.0e-116 421.0 275 85.8
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 7.0e-116 421.0 275 85.8
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 9.2e-116 420.6 277 85.6
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 2.7e-115 419.1 275 84.4
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 7.8e-115 417.5 261 87.4
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.3e-114 416.0 261 87.0
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.0e-114 415.6 320 74.7
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 5.0e-114 414.8 278 82.7
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 8.6e-114 414.1 280 84.3
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.5e-113 413.3 274 85.4
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.9e-113 412.9 277 83.8
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 9.5e-113 410.6 275 83.3
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.6e-112 409.8 270 85.6
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 2.8e-112 409.1 318 73.3
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 4.0e-111 405.2 318 70.1
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 4.0e-111 405.2 299 73.9
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 5.2e-111 404.8 278 80.6
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 2.6e-110 402.5 255 89.8
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 4.4e-110 401.7 264 86.0
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 9.8e-110 400.6 278 80.2
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.7e-109 398.7 269 79.2
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 6.4e-109 397.9 277 80.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 5.4e-108 394.8 273 79.9
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 4.6e-107 391.7 278 79.5
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 6.0e-107 391.3 273 81.0
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 7.8e-107 391.0 274 75.5
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.3e-106 390.2 277 80.1
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.7e-106 389.8 256 82.8
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.9e-106 388.7 256 84.8
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.5e-105 386.0 262 82.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 9.5e-105 384.0 353 62.3
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.1e-104 382.9 281 78.3
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 7.6e-102 374.4 275 77.8
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 6.4e-101 371.3 331 68.6
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.1e-100 370.5 230 90.0
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.9e-100 369.8 230 87.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 4.3e-97 358.6 222 90.1
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 2.0e-94 349.7 222 89.2
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 2.9e-93 345.9 278 66.5
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.1e-92 344.0 268 72.4
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.0e-90 335.9 313 67.1
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 2.5e-89 332.8 224 84.8
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 7.3e-89 331.3 277 66.8
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.6e-89 330.9 250 76.8
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.6e-89 330.9 250 76.8
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 2.8e-88 329.3 281 69.0
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 6.2e-88 328.2 274 66.8
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-87 325.5 274 70.1
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.4e-86 322.0 274 69.7
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 4.9e-85 318.5 284 66.9
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 2.4e-71 273.1 258 60.1
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 5.8e-70 268.5 187 80.7
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.5e-68 263.1 287 53.7
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-67 260.0 278 55.8
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 3.6e-59 232.6 145 90.3
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 6.1e-59 231.9 155 74.8
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 5.7e-57 225.3 181 75.1
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.6e-56 223.8 129 88.4
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.4e-55 220.7 138 83.3
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.6e-51 207.2 132 81.1
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.1e-47 193.0 300 45.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.6e-43 180.6 97 94.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 1.1e-41 174.5 106 84.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 9.7e-41 171.4 90 95.6
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 5.5e-36 155.6 84 92.9
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.7e-34 148.7 152 56.6
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.5e-30 136.0 74 91.9
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.5e-30 136.0 74 91.9
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 4.5e-30 136.0 80 83.8
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.8e-29 132.9 80 82.5
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 9.1e-23 111.7 258 36.4
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 2.5e-20 103.6 157 45.2
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.3e-18 97.1 158 43.7
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 6.8e-18 95.5 123 51.2
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 6.8e-18 95.5 150 39.3
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.5e-17 94.4 74 73.0
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.5e-17 94.4 156 39.1
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-17 94.0 71 84.5
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 2.6e-17 93.6 57 78.9
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 5.7e-17 92.4 157 42.0
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.9e-16 89.4 92 65.2
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 4.9e-16 89.4 160 39.4
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.9e-14 82.4 155 34.8
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.7e-13 80.9 46 87.0
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.8e-13 79.7 46 87.0
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 6.6e-13 79.0 67 61.2
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.3e-12 76.3 331 27.8
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.5e-12 75.1 157 39.5
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 8.0e-11 72.0 43 81.4
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.4e-09 66.6 269 30.5
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.9e-08 63.5 140 41.4
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 3.5e-06 56.6 60 53.3


User provided reference genes

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