Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.1e-107 391.7 188 100.0
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 1.3e-100 369.8 185 96.2
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 1.3e-84 316.6 187 79.7
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.7e-84 316.2 185 82.2
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 1.8e-83 312.8 185 79.5
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.1e-83 312.0 185 80.0
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 4.1e-83 311.6 185 76.8
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 1.2e-82 310.1 185 75.7
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 1.2e-82 310.1 185 78.4
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 1.6e-82 309.7 185 77.3
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.6e-82 309.7 185 78.4
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 2.6e-82 308.9 185 78.4
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 2.6e-82 308.9 185 78.9
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 2.6e-82 308.9 185 78.4
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 3.5e-82 308.5 185 78.4
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 5.9e-82 307.8 185 77.8
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 7.7e-82 307.4 185 77.8
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 7.7e-82 307.4 185 75.7
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 1.0e-81 307.0 185 77.8
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.0e-81 307.0 185 76.2
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 1.3e-81 306.6 180 77.8
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 1.7e-81 306.2 185 77.3
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.7e-81 306.2 185 77.8
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 2.2e-81 305.8 185 75.1
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 2.2e-81 305.8 185 76.2
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 5.0e-81 304.7 185 76.8
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 5.0e-81 304.7 184 75.5
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 6.5e-81 304.3 180 77.8
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 1.1e-80 303.5 185 76.2
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 1.5e-80 303.1 185 75.1
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 1.5e-80 303.1 185 76.8
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 1.5e-80 303.1 185 76.8
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.9e-80 302.8 185 74.6
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.9e-80 302.8 184 76.6
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 2.5e-80 302.4 184 74.5
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 3.2e-80 302.0 185 73.5
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 3.2e-80 302.0 186 76.3
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 4.2e-80 301.6 185 74.6
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 4.2e-80 301.6 185 75.7
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 5.5e-80 301.2 180 75.6
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 7.2e-80 300.8 185 75.7
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 9.4e-80 300.4 185 74.6
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.6e-79 299.7 185 74.6
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.1e-79 299.3 185 73.0
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.1e-79 299.3 185 73.0
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 2.1e-79 299.3 184 76.1
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 3.6e-79 298.5 181 75.7
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 3.6e-79 298.5 181 75.7
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 4.7e-79 298.1 185 73.5
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 6.1e-79 297.7 185 75.7
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 8.0e-79 297.4 185 75.7
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.0e-78 297.0 184 75.0
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 1.0e-78 297.0 186 72.6
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 1.4e-78 296.6 184 75.0
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.8e-78 296.2 183 73.2
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.3e-78 295.8 185 73.5
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 2.3e-78 295.8 184 74.5
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 4.0e-78 295.0 188 72.9
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 5.2e-78 294.7 185 73.5
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 5.2e-78 294.7 180 73.9
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 5.2e-78 294.7 180 74.4
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 6.7e-78 294.3 178 75.8
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 6.7e-78 294.3 180 75.0
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 8.8e-78 293.9 181 75.1
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 8.8e-78 293.9 181 75.1
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 8.8e-78 293.9 181 75.1
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 1.2e-77 293.5 184 73.9
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 1.2e-77 293.5 185 71.9
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.5e-77 293.1 185 71.4
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.0e-77 292.7 181 75.1
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.6e-77 292.4 185 73.0
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 3.3e-77 292.0 183 71.6
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.3e-77 292.0 180 73.3
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.3e-77 292.0 185 73.0
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 4.4e-77 291.6 183 72.1
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 7.5e-77 290.8 180 72.2
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 7.5e-77 290.8 184 72.3
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 7.5e-77 290.8 184 72.8
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 9.7e-77 290.4 185 72.4
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 1.3e-76 290.0 183 71.6
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.3e-76 290.0 181 75.1
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.3e-76 290.0 184 72.8
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 1.7e-76 289.7 185 71.4
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.7e-76 289.7 183 71.0
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 1.7e-76 289.7 183 71.6
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 2.2e-76 289.3 183 72.7
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 2.2e-76 289.3 184 72.3
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 2.2e-76 289.3 183 71.6
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 2.8e-76 288.9 180 71.7
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 3.7e-76 288.5 183 71.0
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 4.8e-76 288.1 188 71.3
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 6.3e-76 287.7 183 69.9
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 6.3e-76 287.7 184 71.7
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 8.2e-76 287.3 178 74.2
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 1.1e-75 287.0 185 71.4
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 1.1e-75 287.0 185 71.4
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 2.4e-75 285.8 183 69.9
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 2.4e-75 285.8 183 69.9
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 2.4e-75 285.8 183 69.9
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 5.3e-75 284.6 183 69.4
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 5.3e-75 284.6 183 69.4
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 5.3e-75 284.6 183 69.4
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 7.0e-75 284.3 183 69.4
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 7.0e-75 284.3 185 70.8
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 1.6e-74 283.1 183 69.4
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.0e-74 282.7 172 75.6
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 3.5e-74 282.0 180 70.0
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 6.5e-73 277.7 185 69.7
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 8.5e-73 277.3 185 70.8
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 4.7e-71 271.6 185 67.0
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 8.0e-71 270.8 181 72.9
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 1.0e-70 270.4 179 69.8
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 2.3e-70 269.2 185 66.5
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 2.3e-70 269.2 179 69.8
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 6.8e-70 267.7 185 65.9
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 1.2e-69 266.9 185 65.9
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 1.5e-69 266.5 185 65.4
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.5e-69 266.5 185 66.5
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.2e-68 262.7 173 68.8
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 1.8e-62 243.0 185 61.6
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.5e-56 223.4 180 51.1
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 2.2e-52 209.5 180 52.2
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 5.4e-51 204.9 177 50.3
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 5.9e-50 201.4 185 50.3
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 3.0e-49 199.1 172 57.0
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 5.0e-49 198.4 180 50.0
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 6.2e-47 191.4 182 47.8
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 9.2e-43 177.6 151 53.6
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 3.0e-41 172.6 180 49.4
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 5.6e-32 141.7 194 41.2
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 7.3e-32 141.4 89 75.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 1.6e-23 113.6 86 61.6
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.7e-20 103.6 154 33.1
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 7.8e-18 94.7 54 75.9


User provided reference genes

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