Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.3e-185 652.1 333 100.0
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.6e-165 585.5 316 95.3
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 1.3e-124 450.3 321 76.0
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 5.1e-105 385.2 339 66.1
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 1.1e-104 384.0 338 65.1
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 3.8e-100 369.0 316 64.6
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 9.4e-99 364.4 314 64.3
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.4e-97 360.5 316 63.3
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.8e-97 360.1 320 62.2
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 4.8e-95 352.1 315 62.2
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 3.1e-94 349.4 319 62.4
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 4.1e-94 349.0 324 60.8
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 7.0e-94 348.2 334 62.0
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 7.0e-94 348.2 324 60.8
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.0e-92 344.4 296 63.9
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.9e-92 342.8 324 60.5
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 5.0e-92 342.0 324 59.3
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.1e-91 340.9 320 61.2
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.6e-90 337.0 319 58.3
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.6e-90 337.0 314 60.5
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.6e-90 335.9 307 59.6
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 6.1e-90 335.1 320 61.9
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 8.0e-90 334.7 325 58.8
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 8.0e-90 334.7 314 60.5
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 8.0e-90 334.7 297 60.6
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 8.0e-90 334.7 306 62.4
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 3.0e-89 332.8 302 60.9
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 4.0e-89 332.4 304 61.8
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 5.2e-89 332.0 304 61.8
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 6.8e-89 331.6 318 58.8
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 2.8e-87 326.2 303 62.0
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 2.4e-86 323.2 297 59.6
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.2e-85 320.9 295 60.3
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 2.7e-85 319.7 317 58.0
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.3e-84 317.4 297 58.9
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 3.8e-84 315.8 297 61.3
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 3.8e-84 315.8 301 60.1
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 6.5e-84 315.1 299 58.5
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 7.2e-83 311.6 320 59.4
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.6e-82 310.5 296 57.8
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 2.1e-82 310.1 316 58.2
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 3.6e-82 309.3 308 56.8
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 4.7e-82 308.9 296 59.1
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.4e-81 307.4 297 58.2
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 5.2e-81 305.4 314 59.2
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 5.7e-80 302.0 320 58.4
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.3e-79 300.8 302 56.3
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 3.1e-78 296.2 314 54.8
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 5.4e-78 295.4 321 54.5
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 7.0e-78 295.0 322 55.3
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 9.1e-78 294.7 323 55.7
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 3.8e-76 289.3 300 53.0
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 8.6e-76 288.1 313 52.1
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.1e-75 287.7 335 53.1
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.1e-75 287.7 345 50.1
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.9e-75 287.0 249 62.2
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.3e-75 286.2 301 58.5
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 7.2e-75 285.0 320 51.9
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 7.2e-75 285.0 296 53.7
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.6e-74 283.9 309 50.2
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 6.1e-74 282.0 299 54.8
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.3e-73 280.0 298 52.0
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.3e-73 280.0 320 53.4
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 3.0e-73 279.6 320 53.4
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 4.0e-73 279.3 305 51.1
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 6.8e-73 278.5 301 56.5
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 2.0e-72 276.9 302 51.3
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 2.6e-72 276.6 298 51.7
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 4.4e-72 275.8 159 90.6
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 4.4e-72 275.8 320 53.1
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 5.7e-72 275.4 174 82.8
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.3e-71 274.2 304 54.3
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.7e-71 273.9 298 52.0
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.2e-71 273.5 316 49.7
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 7.0e-70 268.5 299 53.8
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.0e-69 266.9 301 50.2
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 5.9e-69 265.4 321 52.0
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 5.9e-69 265.4 321 52.0
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.3e-68 264.2 312 52.2
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 2.3e-68 263.5 308 52.6
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 3.9e-68 262.7 311 50.2
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 3.9e-68 262.7 185 77.8
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 8.6e-68 261.5 317 51.7
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 2.1e-66 256.9 296 53.0
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 6.1e-66 255.4 315 50.8
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.5e-64 250.8 299 50.5
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 3.4e-64 249.6 299 51.2
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.7e-63 247.3 290 48.6
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 2.9e-63 246.5 321 48.6
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 2.9e-63 246.5 303 48.2
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 6.4e-63 245.4 308 51.3
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.4e-62 244.2 319 48.6
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 9.2e-62 241.5 305 47.5
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.3e-60 237.7 283 53.4
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 3.9e-60 236.1 302 47.4
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.5e-59 233.4 305 47.5
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 5.6e-59 232.3 316 45.6
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.6e-59 232.3 319 47.6
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 7.3e-59 231.9 305 47.2
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 7.3e-59 231.9 315 46.3
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.2e-58 231.1 313 49.8
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 3.6e-58 229.6 194 61.9
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.4e-57 227.6 159 76.7
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 6.8e-57 225.3 348 44.8
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 3.4e-56 223.0 190 60.0
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.2e-55 220.3 304 45.7
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 5.4e-54 215.7 312 44.2
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 7.1e-54 215.3 315 43.8
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 7.1e-54 215.3 302 44.4
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.6e-50 204.1 329 42.2
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.4e-46 191.0 190 54.7
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.6e-45 187.6 279 41.9
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-43 181.4 268 43.3
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.8e-41 174.1 224 46.4
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 4.0e-41 172.9 203 50.2
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 8.9e-41 171.8 322 38.2
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 3.8e-39 166.4 312 37.8
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 6.4e-39 165.6 302 38.1
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 6.4e-39 165.6 302 38.1
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.7e-37 160.2 320 38.8
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.8e-37 158.7 133 61.7
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 8.7e-36 155.2 215 49.3
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 4.3e-35 152.9 327 35.2
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 4.3e-35 152.9 139 58.3
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.3e-33 146.0 233 44.6
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.4e-32 143.3 176 50.0
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 7.3e-27 125.6 209 39.2
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 9.6e-27 125.2 81 85.2
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 4.0e-25 119.8 139 54.7
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.4e-22 109.4 234 38.0
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 6.0e-13 79.3 92 47.8
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.1e-11 75.1 95 49.5
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 4.8e-10 69.7 99 41.4
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 4.8e-10 69.7 92 42.4
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.3e-07 61.6 67 49.3
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.3e-07 61.6 86 46.5
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 3.8e-07 60.1 119 37.0
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 6.5e-07 59.3 121 37.2


User provided reference genes

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