Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 5.6e-108 394.4 220 100.0
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.5e-92 342.4 220 87.7
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.0e-80 303.9 212 82.5
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 2.1e-75 286.2 209 79.4
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 3.4e-73 278.9 218 72.5
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.7e-72 276.6 194 82.5
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 2.7e-54 216.1 169 69.8
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 3.9e-53 212.2 221 57.9
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 6.7e-53 211.5 145 81.4
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 9.7e-52 207.6 142 83.1
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 8.5e-48 194.5 218 56.0
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 7.2e-47 191.4 226 53.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.2e-46 190.7 218 52.8
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 6.1e-46 188.3 220 54.1
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 8.8e-45 184.5 217 52.1
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 7.5e-44 181.4 219 50.2
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.7e-43 180.3 223 53.4
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 2.2e-43 179.9 223 52.5
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 4.8e-43 178.7 217 53.5
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 6.3e-43 178.3 219 54.3
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.1e-42 177.6 221 52.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.1e-42 176.0 221 53.4
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 2.7e-41 172.9 223 51.1
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 3.5e-41 172.6 218 50.0
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 4.5e-41 172.2 221 52.5
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.0e-40 171.0 225 50.2
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 3.8e-40 169.1 222 50.9
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 8.5e-40 167.9 225 50.2
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 1.1e-39 167.5 225 52.4
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.5e-39 167.2 224 52.2
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 4.2e-39 165.6 221 47.1
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 5.5e-39 165.2 223 49.3
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 9.4e-39 164.5 218 50.0
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 1.2e-38 164.1 221 51.1
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.6e-38 163.7 219 49.3
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.6e-38 163.7 222 47.7
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 4.7e-38 162.2 225 52.0
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.0e-38 161.4 223 49.8
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.0e-37 161.0 216 50.5
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.4e-37 160.6 270 45.9
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.8e-37 160.2 225 49.3
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 3.0e-37 159.5 222 50.0
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 3.0e-37 159.5 223 46.2
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 6.8e-37 158.3 223 45.7
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.2e-36 157.5 221 48.0
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.2e-36 157.5 220 47.3
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.5e-36 157.1 221 47.5
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.0e-36 156.8 221 48.0
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 4.4e-36 155.6 220 47.3
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 5.7e-36 155.2 208 49.5
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.3e-35 154.1 219 47.5
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 2.2e-35 153.3 222 48.2
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 3.7e-35 152.5 221 47.5
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.8e-34 150.2 222 50.9
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 3.1e-34 149.4 263 43.0
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 3.1e-34 149.4 210 49.0
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 9.1e-34 147.9 182 51.6
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 9.1e-34 147.9 224 46.4
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 3.5e-33 146.0 230 47.4
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.7e-32 143.7 261 40.2
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.8e-32 142.5 224 44.2
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 8.5e-32 141.4 234 47.4
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.5e-31 139.8 231 45.0
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 2.5e-31 139.8 162 54.9
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.2e-31 139.4 236 45.3
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 3.2e-31 139.4 222 46.8
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.2e-31 139.0 188 51.1
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.2e-31 139.0 188 51.1
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.5e-31 138.7 188 51.1
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.6e-30 137.1 188 50.5
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.6e-30 137.1 220 48.2
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 4.7e-30 135.6 227 42.3
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 4.7e-30 135.6 225 45.3
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 2.3e-29 133.3 273 41.4
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.3e-29 133.3 222 43.2
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 2.6e-28 129.8 221 43.0
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 5.7e-28 128.6 222 41.9
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.5e-28 128.3 231 44.2
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 7.5e-28 128.3 222 41.4
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 9.8e-28 127.9 224 43.3
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.7e-27 127.1 224 42.9
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-26 124.4 231 43.3
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.4e-26 123.2 81 85.2
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 7.0e-26 121.7 69 94.2
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 9.2e-26 121.3 217 39.6
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 2.0e-25 120.2 220 41.4
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 3.5e-25 119.4 249 37.3
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.5e-25 119.4 205 48.3
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 7.8e-25 118.2 190 42.6
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.3e-24 117.5 220 39.5
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.7e-24 117.1 225 42.2
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.8e-24 115.9 220 39.5
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 6.6e-24 115.2 220 39.1
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.1e-23 114.4 223 39.9
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 7.3e-23 111.7 70 88.6
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.2e-22 110.9 204 49.5
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-22 110.5 230 40.4
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-22 110.5 230 40.4
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.2e-21 105.5 209 38.8
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 6.8e-21 105.1 166 48.2
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.0e-20 103.6 161 48.4
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 2.6e-20 103.2 225 37.3
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 5.7e-20 102.1 173 41.0
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 9.8e-20 101.3 234 38.0
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 9.8e-20 101.3 252 35.3
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.7e-19 100.5 226 38.9
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 3.7e-19 99.4 169 42.0
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 8.3e-19 98.2 230 38.7
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 8.3e-19 98.2 225 37.3
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.1e-18 97.8 229 39.7
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 4.1e-18 95.9 203 38.4
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 9.2e-18 94.7 230 36.1
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 9.2e-18 94.7 171 40.9
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.6e-17 94.0 169 41.4
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 4.6e-17 92.4 228 36.0
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.3e-16 90.9 221 35.7
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.3e-16 90.1 221 33.9
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 3.9e-16 89.4 165 39.4
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.5e-15 86.7 162 40.1
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 2.5e-15 86.7 230 36.5
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.5e-15 86.7 162 40.1
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 2.5e-15 86.7 230 36.5
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.6e-14 84.0 78 61.5
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 4.4e-12 75.9 76 50.0
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.9e-10 70.5 225 34.2
CiPaw.14G124400 Carya illinoinensis HOM05D000009 ORTHO05D000008 3.3e-07 59.7 70 55.7
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 3.6e-06 56.2 110 35.5
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 4.7e-06 55.8 40 62.5


User provided reference genes

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