Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 5.2e-204 714.1 361 100.0
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 3.0e-175 618.6 361 85.3
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 9.0e-164 580.5 357 80.7
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.4e-161 573.2 390 74.9
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 2.7e-160 568.9 361 77.8
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 2.3e-159 565.8 357 77.3
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 3.9e-159 565.1 358 78.8
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.1e-158 563.5 361 77.6
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 1.1e-158 563.5 358 77.4
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 1.5e-158 563.1 358 78.2
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 2.0e-158 562.8 355 77.7
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 9.7e-158 560.5 354 78.5
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 7.7e-155 550.8 355 76.6
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 7.7e-155 550.8 361 73.7
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 2.9e-154 548.9 355 75.8
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 3.8e-154 548.5 357 76.5
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 1.4e-153 546.6 355 76.9
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 7.2e-153 544.3 361 73.4
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 9.4e-153 543.9 355 77.5
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 9.4e-153 543.9 355 77.5
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 9.4e-153 543.9 361 74.2
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 6.1e-152 541.2 362 75.4
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 6.1e-152 541.2 361 76.5
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.8e-151 539.7 354 75.4
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 3.0e-151 538.9 359 75.5
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.0e-151 538.9 355 74.4
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 3.0e-151 538.9 355 74.4
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 6.7e-151 537.7 355 74.4
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 3.3e-150 535.4 354 75.7
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 3.3e-150 535.4 355 76.3
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 4.4e-150 535.0 355 75.8
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 1.3e-149 533.5 361 73.7
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 4.8e-149 531.6 361 73.7
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 8.2e-149 530.8 361 74.0
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 7.0e-148 527.7 356 75.0
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 2.0e-147 526.2 355 72.4
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 3.5e-147 525.4 355 72.4
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 3.5e-147 525.4 360 74.7
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.0e-146 523.9 355 72.1
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.3e-146 523.5 354 72.0
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 3.8e-146 521.9 355 71.0
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.5e-145 520.0 356 71.1
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 4.2e-145 518.5 355 73.8
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 5.5e-145 518.1 361 72.0
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 9.4e-145 517.3 354 72.0
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.7e-144 515.8 355 72.1
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 8.0e-144 514.2 362 70.7
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.0e-143 513.8 354 71.8
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.4e-143 513.5 361 72.0
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 1.1e-142 510.4 354 70.9
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.5e-142 510.0 355 71.8
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 3.3e-142 508.8 354 71.8
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 7.5e-142 507.7 354 72.3
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 9.7e-142 507.3 357 73.1
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.3e-141 506.9 358 71.2
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 3.7e-141 505.4 354 70.9
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.1e-140 503.8 354 71.2
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 1.1e-140 503.8 361 68.7
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.4e-140 503.4 354 71.2
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 7.7e-139 497.7 361 72.0
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.7e-138 496.5 354 69.5
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 1.7e-138 496.5 312 79.8
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 2.9e-138 495.7 354 70.1
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 5.0e-138 495.0 354 69.8
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 8.5e-138 494.2 354 69.5
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 1.5e-137 493.4 389 65.6
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.9e-137 493.0 360 68.9
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 2.5e-137 492.7 354 69.5
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 3.2e-137 492.3 355 69.9
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 2.1e-136 489.6 354 70.1
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.0e-134 483.0 354 66.1
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 2.2e-133 479.6 355 68.2
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.8e-133 479.2 355 68.5
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 5.4e-132 474.9 357 66.4
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 9.1e-132 474.2 355 67.6
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 5.0e-130 468.4 355 64.8
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 5.0e-130 468.4 354 67.8
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.5e-129 466.8 360 66.1
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 5.5e-129 464.9 360 63.1
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.2e-126 457.2 360 63.1
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 4.4e-126 455.3 370 64.1
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 9.8e-126 454.1 352 67.6
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 1.3e-125 453.8 472 54.9
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 2.2e-125 453.0 374 63.1
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 3.7e-125 452.2 353 65.7
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.4e-124 449.5 361 62.6
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 3.5e-123 445.7 361 61.5
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.3e-117 427.2 299 77.3
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 3.9e-114 415.6 356 59.0
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 2.1e-112 409.8 355 61.1
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.5e-105 387.1 252 73.4
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.8e-104 382.9 257 72.0
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.4e-103 380.6 258 72.1
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 3.7e-101 372.5 359 56.8
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 7.3e-97 358.2 348 50.3
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 2.1e-96 356.7 251 69.3
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.4e-92 344.0 360 47.5
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 5.1e-90 335.5 379 47.0
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.7e-85 320.5 360 50.6
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 9.3e-84 314.7 344 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 4.6e-83 312.4 346 46.5
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.1e-81 307.8 201 76.1
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.1e-80 303.5 359 46.5
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.2e-75 287.7 203 67.5
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.0e-74 284.6 341 45.5
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.1e-72 276.9 343 41.7
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.0e-66 258.1 354 39.8
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.3e-66 257.7 355 41.7
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.8e-55 220.7 147 77.6
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 2.8e-48 196.8 148 66.2
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.1e-39 168.3 182 55.5
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 2.0e-38 164.1 402 31.1
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 2.0e-38 164.1 214 46.7
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 4.4e-33 146.4 102 69.6
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.8e-31 141.0 128 57.0
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 2.4e-31 140.6 100 69.0
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.2e-30 138.3 356 29.2
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 4.5e-30 136.3 137 58.4
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 8.5e-29 132.1 135 56.3
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 1.2e-27 128.3 96 68.8
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.1e-27 127.5 83 73.5
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 8.2e-24 115.5 96 61.5
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 1.4e-23 114.8 92 62.0
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.9e-21 107.1 83 69.9
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 7.2e-20 102.4 83 67.5
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 9.4e-20 102.1 137 46.0
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 1.3e-16 91.7 98 50.0
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 1.3e-16 91.7 98 50.0
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 9.1e-15 85.5 78 62.8
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.3e-13 81.6 55 69.1
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 7.5e-09 65.9 89 41.6
Cfa023857 Carpinus fangiana HOM05D057041 ORTHO05D018939 9.2e-07 58.9 209 25.4


User provided reference genes

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