Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009666 Carpinus fangiana HOM05D003443 ORTHO05D008640 2.4e-60 235.3 120 100.0
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 3.9e-31 138.3 93 80.6
Haze_00480 Corylus avellana HOM05D003443 ORTHO05D008640 8.2e-29 130.6 94 77.7
CiPaw.05G224500 Carya illinoinensis HOM05D003443 ORTHO05D008640 8.5e-26 120.6 93 72.0
QL08p024382 Quercus lobata HOM05D003443 ORTHO05D008640 7.2e-25 117.5 90 68.9
Sabra02G0067600 Salix brachista HOM05D003443 ORTHO05D008640 2.1e-24 115.9 90 66.7
Potri.002G086200 Populus trichocarpa HOM05D003443 ORTHO05D008640 1.4e-23 113.2 90 65.6
Manes.18G075200 Manihot esculenta HOM05D003443 ORTHO05D008640 1.2e-22 110.2 90 64.4
Atru.chr13.1408 Acer truncatum HOM05D003443 ORTHO05D008640 2.2e-21 105.9 93 60.2
TAR628G1666 Trochodendron aralioides HOM05D003443 ORTHO05D008640 3.7e-21 105.1 100 59.0
GSVIVG01008902001 Vitis vinifera HOM05D003443 ORTHO05D008640 7.0e-20 100.9 81 61.7
CSS0034050 Camellia sinensis var. sinensis HOM05D003443 ORTHO05D008640 9.1e-20 100.5 89 57.3
Thecc.08G121300 Theobroma cacao HOM05D003443 ORTHO05D008640 1.6e-19 99.8 89 58.4
RcHm_v2.0_Chr6g0295401 Rosa chinensis HOM05D003443 ORTHO05D008640 3.5e-19 98.6 90 55.6
Actinidia23064 Actinidia chinensis HOM05D003443 ORTHO05D008640 4.5e-19 98.2 86 58.1
Cpa.g.sc70.11 Carica papaya HOM05D003443 ORTHO05D008640 5.9e-19 97.8 88 58.0
MD15G1353300 Malus domestica HOM05D003443 ORTHO05D008640 1.0e-18 97.1 93 53.8
FAN15G0021 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.3e-18 96.7 93 51.6
FAN27G2419 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.3e-18 96.7 93 52.7
MD03G1200300 Malus domestica HOM05D003443 ORTHO05D008640 1.3e-18 96.7 93 53.8
FAN24G2127 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.7e-18 96.3 90 52.2
Dinv40389 Davidia involucrata HOM05D003443 ORTHO05D008640 2.2e-18 95.9 83 61.4
Prupe.1G501600 Prunus persica HOM05D003443 ORTHO05D008640 2.9e-18 95.5 93 53.8
Ciclev10002759m.g Citrus clementina HOM05D003443 ORTHO05D008640 6.5e-18 94.4 89 57.3
Gorai.009G244100 Gossypium raimondii HOM05D003443 ORTHO05D008640 1.1e-17 93.6 90 55.6
Actinidia02607 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.5e-17 93.2 86 55.8
FvH4_2g26530 Fragaria vesca HOM05D003443 ORTHO05D008640 1.9e-17 92.8 90 51.1
Gohir.D05G235800 Gossypium hirsutum HOM05D003443 ORTHO05D008640 3.2e-17 92.0 90 54.4
Gohir.A05G233400 Gossypium hirsutum HOM05D003443 ORTHO05D008640 5.5e-17 91.3 90 53.3
MD08G1167900 Malus domestica HOM05D003443 ORTHO05D008640 5.5e-17 91.3 94 51.1
BcaB01g02870 Brassica carinata HOM05D003443 ORTHO05D008640 2.1e-16 89.4 84 52.4
Hma1.2p1_0073F.1_g038390 Hydrangea macrophylla HOM05D003443 ORTHO05D008640 2.7e-16 89.0 81 59.3
AL6G41970 Arabidopsis lyrata HOM05D003443 ORTHO05D008640 3.6e-16 88.6 84 53.6
AT4G08240 Arabidopsis thaliana HOM05D003443 ORTHO05D008640 3.6e-16 88.6 84 53.6
Aa31LG9G14320 Aethionema arabicum HOM05D003443 ORTHO05D008640 8.0e-16 87.4 86 53.5
arahy.Tifrunner.gnm1.ann1.B00VWE Arachis hypogaea HOM05D003443 ORTHO05D008640 1.0e-15 87.0 91 49.5
BraA03t12014Z Brassica rapa HOM05D003443 ORTHO05D008640 1.4e-15 86.7 84 51.2
vmacro12548 Vaccinium macrocarpon HOM05D003443 ORTHO05D008640 1.4e-15 86.7 83 55.4
AUR62004720 Chenopodium quinoa HOM05D003443 ORTHO05D008640 2.3e-15 85.9 88 50.0
Lalb_Chr10g0101911 Lupinus albus HOM05D003443 ORTHO05D008640 2.3e-15 85.9 89 50.6
THA.LOC104817138 Tarenaya hassleriana HOM05D003443 ORTHO05D008640 2.3e-15 85.9 84 53.6
DCAR_014106 Daucus carota HOM05D003443 ORTHO05D008640 3.0e-15 85.5 82 54.9
MBI06_g44272_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 4.0e-15 85.1 84 53.6
MBI15_g35999_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 4.0e-15 85.1 84 53.6
Sp6g09810 Schrenkiella parvula HOM05D003443 ORTHO05D008640 5.2e-15 84.7 87 49.4
arahy.Tifrunner.gnm1.ann1.ZIXY5S Arachis hypogaea HOM05D003443 ORTHO05D008640 6.8e-15 84.3 90 47.8
A03p27990 Brassica napus HOM05D003443 ORTHO05D008640 6.8e-15 84.3 84 51.2
VMungo0647G0179 Vigna mungo HOM05D003443 ORTHO05D008640 6.8e-15 84.3 77 59.7
Sc01g0001350 Simmondsia chinensis HOM05D003443 ORTHO05D008640 1.2e-14 83.6 81 53.1
Hund27039 Selenicereus undatus HOM05D003443 ORTHO05D008640 1.5e-14 83.2 78 53.8
Thhalv10029053m.g Eutrema salsugineum HOM05D003443 ORTHO05D008640 2.6e-14 82.4 84 51.2
Nn4g26023 Nelumbo nucifera HOM05D003443 ORTHO05D008640 2.6e-14 82.4 81 53.1
Carub.0006s2677 Capsella rubella HOM05D003443 ORTHO05D008640 4.4e-14 81.6 84 47.6
BcaC01g04776 Brassica carinata HOM05D003443 ORTHO05D008640 5.7e-14 81.3 84 48.8
C03p33840 Brassica napus HOM05D003443 ORTHO05D008640 5.7e-14 81.3 84 48.8
BolC3t15700H Brassica oleracea HOM05D003443 ORTHO05D008640 5.7e-14 81.3 84 48.8
AUR62023639 Chenopodium quinoa HOM05D003443 ORTHO05D008640 5.7e-14 81.3 76 52.6
Medtr5g058660 Medicago truncatula HOM05D003443 ORTHO05D008640 5.7e-14 81.3 76 59.2
Medtr5g059030 Medicago truncatula HOM05D003443 ORTHO05D008640 5.7e-14 81.3 76 59.2
Rhsim06G0105400 Rhododendron simsii HOM05D003443 ORTHO05D008640 5.7e-14 81.3 86 54.7
Glyma.14G162600 Glycine max HOM05D003443 ORTHO05D008640 7.5e-14 80.9 75 57.3
PSO170G0931 Papaver somniferum HOM05D003443 ORTHO05D008640 1.3e-13 80.1 75 61.3
TWI12G0841 Tripterygium wilfordii HOM05D003443 ORTHO05D008640 1.3e-13 80.1 90 53.3
Psat2g087720 Pisum sativum HOM05D003443 ORTHO05D008640 1.7e-13 79.7 85 54.1
Ca_26970_v3 Cicer arietinum L. HOM05D003443 ORTHO05D008640 2.8e-13 79.0 76 57.9
Eucgr.L01689 Eucalyptus grandis HOM05D003443 ORTHO05D008640 3.7e-13 78.6 90 50.0
CARHR259340 Cardamine hirsuta HOM05D003443 ORTHO05D008640 4.8e-13 78.2 81 49.4
Lj1g0013808 Lotus japonicus HOM05D003443 ORTHO05D008640 4.8e-13 78.2 83 50.6
Ah.16g110170 Amaranthus hybridus HOM05D003443 ORTHO05D008640 3.1e-12 75.5 78 50.0
CANSAT25G1680 Cannabis sativa HOM05D003443 ORTHO05D008640 2.7e-11 72.4 83 45.8
ATR0121G005 Amborella trichopoda HOM05D003443 ORTHO05D008640 5.9e-11 71.2 76 51.3
Nitab4.5_0002883g0010 Nicotiana tabacum HOM05D003443 ORTHO05D008640 1.3e-10 70.1 74 50.0
Cc10_g11000 Coffea canephora HOM05D003443 ORTHO05D008640 2.9e-10 68.9 82 47.6
Nitab4.5_0001926g0050 Nicotiana tabacum HOM05D003443 ORTHO05D008640 5.0e-10 68.2 74 48.6
Peaxi162Scf00198g00098 Petunia axillaris HOM05D003443 ORTHO05D008640 8.6e-10 67.4 74 45.9
Peaxi162Scf00395g00717 Petunia axillaris HOM05D003443 ORTHO05D008640 8.6e-10 67.4 74 45.9
MELO3C011304.2 Cucumis melo HOM05D003443 ORTHO05D008640 3.3e-09 65.5 75 48.0
ClCG08G005410 Citrullus lanatus HOM05D003443 ORTHO05D008640 4.2e-09 65.1 75 48.0
CAN.G513.1 Capsicum annuum HOM05D003443 ORTHO05D008640 5.5e-09 64.7 74 45.9
Cpa.g.sc36.31 Carica papaya HOM05D003443 ORTHO05D008640 5.5e-09 64.7 104 40.4
Duzib093G0610 Durio zibethinus HOM05D003443 ORTHO05D008640 5.5e-09 64.7 50 66.0
PGR044G0044 Punica granatum HOM05D003443 ORTHO05D008640 7.2e-09 64.3 75 48.0
Oeu047933.1 Olea europaea HOM05D003443 ORTHO05D008640 1.2e-08 63.5 99 44.4
MELO3C011587.2 Cucumis melo HOM05D003443 ORTHO05D008640 1.6e-08 63.2 74 47.3
CsaV3_6G003590 Cucumis sativus L. HOM05D003443 ORTHO05D008640 1.6e-08 63.2 74 47.3
Solyc11g013020.2 Solanum lycopersicum HOM05D003443 ORTHO05D008640 2.8e-08 62.4 73 45.2
Sopen11g007760 Solanum pennellii HOM05D003443 ORTHO05D008640 2.8e-08 62.4 73 45.2
SGA_v2.0_scaffold52G18981 Striga asiatica HOM05D003443 ORTHO05D008640 2.8e-08 62.4 74 51.4
SalBow7G2413 Salvia bowleyana HOM05D003443 ORTHO05D008640 3.6e-08 62.0 74 48.6
SalBow7G4791 Salvia bowleyana HOM05D003443 ORTHO05D008640 3.6e-08 62.0 74 48.6
PGSC0003DMG400000906 Solanum tuberosum HOM05D003443 ORTHO05D008640 3.6e-08 62.0 73 45.2
Migut.C01148 Erythranthe guttata HOM05D003443 ORTHO05D008640 4.7e-08 61.6 74 51.4
Phvul.008G165400 Phaseolus vulgaris HOM05D003443 ORTHO05D008640 6.1e-08 61.2 75 46.7
Lsat_1_v5_gn_4_136221 Lactuca sativa HOM05D003443 ORTHO05D008640 1.4e-07 60.1 83 41.0
Sed0028054 Sechium edule HOM05D003443 ORTHO05D008640 1.8e-07 59.7 74 45.9
Aqoxy6G00163 Aquilegia oxysepala HOM05D003443 ORTHO05D008640 2.3e-07 59.3 87 39.1
ECA232G0443 Erigeron canadensis HOM05D003443 ORTHO05D008640 2.0e-06 56.2 77 39.0
HPP92_002301 Vanilla planifolia HOM05D003443 ORTHO05D008640 2.6e-06 55.8 77 42.9


User provided reference genes

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