Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.1e-122 443.4 223 100.0
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 9.4e-111 403.7 222 89.2
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 5.7e-108 394.4 224 87.1
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 6.9e-106 387.5 226 86.3
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 2.2e-104 382.5 211 91.0
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 2.2e-104 382.5 226 86.3
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 2.2e-104 382.5 223 85.2
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 3.8e-104 381.7 222 84.2
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 5.0e-104 381.3 226 85.0
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 5.0e-104 381.3 221 84.2
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 9.4e-103 377.1 230 83.0
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.6e-102 376.3 224 83.5
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 2.1e-102 375.9 212 88.2
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.7e-102 375.6 224 84.4
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.7e-102 375.6 225 83.6
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.6e-102 375.2 224 84.4
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 4.7e-102 374.8 224 83.9
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 7.9e-102 374.0 224 83.9
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 7.9e-102 374.0 224 84.4
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.0e-101 372.1 224 83.0
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.5e-100 369.8 223 80.7
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.7e-99 366.3 225 82.7
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.7e-99 366.3 225 82.7
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 2.2e-99 365.9 231 79.2
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 4.8e-99 364.8 224 81.2
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 6.3e-99 364.4 223 82.1
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 8.2e-99 364.0 223 80.3
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 1.4e-98 363.2 224 79.9
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.4e-98 363.2 218 80.7
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 7.0e-98 360.9 225 80.0
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.2e-97 360.1 225 79.6
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 3.5e-97 358.6 226 78.8
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 5.9e-97 357.8 225 80.9
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 7.7e-97 357.5 219 80.4
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.3e-96 356.7 225 80.4
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.5e-95 353.2 223 80.3
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 3.2e-95 352.1 223 80.3
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 3.2e-95 352.1 250 74.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 1.6e-94 349.7 223 77.6
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.1e-94 349.4 221 76.0
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.7e-94 349.0 229 76.4
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 4.7e-94 348.2 225 77.3
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.0e-93 347.1 224 76.8
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.8e-93 346.3 223 79.4
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.1e-92 343.6 217 79.3
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.0e-92 342.8 216 75.0
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 2.6e-92 342.4 221 75.6
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 4.4e-92 341.7 227 73.6
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 7.5e-92 340.9 218 75.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 7.5e-92 340.9 224 75.4
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 7.5e-92 340.9 224 75.4
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.3e-91 340.1 223 74.0
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.3e-91 340.1 228 74.6
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.2e-91 339.3 229 74.7
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 4.8e-91 338.2 227 72.2
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.8e-91 338.2 223 73.5
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 8.2e-91 337.4 227 74.0
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.1e-90 337.0 225 70.7
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.8e-90 336.3 220 73.6
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.4e-90 335.9 217 75.1
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.4e-90 335.9 232 70.3
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 4.1e-90 335.1 221 74.2
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 7.0e-90 334.3 225 72.4
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.6e-89 333.2 218 74.8
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.6e-89 333.2 226 70.4
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.5e-89 332.0 221 72.9
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 3.5e-89 332.0 226 71.2
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 4.5e-89 331.6 225 72.0
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 5.9e-89 331.3 227 70.5
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 7.7e-89 330.9 221 73.3
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.0e-88 330.5 232 69.4
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.0e-88 330.5 232 69.4
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.7e-88 329.7 219 73.5
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.7e-88 329.7 226 70.4
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.7e-88 329.7 225 71.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.2e-88 329.3 225 73.8
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 2.9e-88 328.9 325 57.2
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.9e-88 328.9 228 73.2
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.9e-88 328.9 227 69.6
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 3.8e-88 328.6 224 73.2
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 6.5e-88 327.8 218 75.2
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 6.5e-88 327.8 211 72.5
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 8.5e-88 327.4 225 70.7
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.1e-87 327.0 225 70.7
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.1e-87 327.0 220 70.9
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.9e-87 326.2 225 71.6
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.9e-87 326.2 225 71.6
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 3.2e-87 325.5 223 72.2
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 5.5e-87 324.7 224 70.5
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 1.6e-86 323.2 224 70.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.6e-86 323.2 225 69.8
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 4.7e-86 321.6 229 68.6
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 1.2e-84 317.0 216 70.8
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 2.0e-84 316.2 219 70.8
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.0e-84 316.2 220 70.9
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 2.0e-84 316.2 223 70.0
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 4.4e-84 315.1 221 69.2
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 4.4e-84 315.1 357 52.1
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 1.7e-83 313.2 225 69.3
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 2.8e-83 312.4 224 67.4
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 6.3e-83 311.2 222 66.7
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.4e-82 310.1 222 69.4
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 1.2e-81 307.0 221 66.5
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.7e-81 305.8 227 67.4
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 1.0e-80 303.9 216 69.0
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.3e-80 303.5 219 68.9
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.3e-80 303.5 216 69.0
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.7e-80 303.1 225 69.3
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 8.5e-80 300.8 216 66.2
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 1.9e-79 299.7 222 66.7
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.9e-79 299.7 225 67.6
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.6e-78 296.6 308 52.3
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 6.1e-78 294.7 225 68.0
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.4e-77 293.5 218 64.7
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 5.2e-77 291.6 221 63.8
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 5.2e-77 291.6 221 64.7
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 2.6e-76 289.3 223 63.2
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 8.3e-75 284.3 219 62.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 5.9e-73 278.1 219 59.8
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.3e-72 276.9 171 80.7
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.8e-72 275.4 218 61.0
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.0e-69 267.3 218 57.3
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 8.9e-69 264.2 222 62.6
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.2e-68 263.8 222 66.7
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.7e-67 260.0 153 82.4
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 4.7e-62 241.9 152 76.3
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 4.0e-61 238.8 153 73.9
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 4.0e-61 238.8 139 82.0
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.4e-58 230.3 152 73.7
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 4.1e-58 228.8 176 65.9
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 8.1e-54 214.5 162 66.7
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.0e-52 209.9 122 86.1
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 3.4e-52 209.1 196 58.7
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 3.0e-48 196.1 130 72.3
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 8.6e-48 194.5 107 86.0
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 4.0e-45 185.7 115 76.5
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 8.9e-45 184.5 117 76.9
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.9e-42 176.8 111 74.8
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.9e-42 176.8 111 74.8
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 2.4e-42 176.4 99 85.9
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.3e-40 170.6 117 72.6
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 7.3e-39 164.9 118 71.2
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 3.6e-38 162.5 95 82.1
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.2e-37 158.7 121 68.6
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.6e-33 147.1 198 37.9
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 7.3e-31 138.3 83 79.5
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.6e-30 137.1 117 65.8
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.0e-28 130.2 107 64.5
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 5.6e-23 112.1 81 70.4
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 1.1e-15 87.8 57 75.4
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 2.4e-13 80.1 200 32.0
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.2e-12 77.8 47 80.9
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.4e-10 70.9 77 48.1
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 7.9e-09 65.1 79 50.6
MD03G1018200 Malus domestica HOM05D004698 ORTHO05D005699 8.2e-06 55.1 42 71.4


User provided reference genes

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