Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 1.4e-37 159.1 80 100.0
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 1.1e-32 142.9 80 93.8
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 3.6e-20 101.3 83 68.7
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 4.5e-15 84.3 79 57.0
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 5.9e-15 84.0 61 65.6
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 1.3e-14 82.8 70 64.3
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 1.7e-14 82.4 80 58.8
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 2.2e-14 82.0 69 63.8
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 2.2e-14 82.0 69 65.2
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 2.9e-14 81.6 69 68.1
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 6.5e-14 80.5 70 68.6
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 6.5e-14 80.5 69 63.8
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 8.5e-14 80.1 62 64.5
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 1.1e-13 79.7 69 66.7
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 1.1e-13 79.7 70 62.9
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 1.5e-13 79.3 48 75.0
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 1.5e-13 79.3 70 64.3
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 1.5e-13 79.3 65 63.1
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 1.9e-13 79.0 46 82.6
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 1.9e-13 79.0 56 69.6
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 3.2e-13 78.2 68 66.2
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 3.2e-13 78.2 56 71.4
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 5.5e-13 77.4 39 92.3
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 5.5e-13 77.4 39 92.3
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 5.5e-13 77.4 70 64.3
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 5.5e-13 77.4 56 73.2
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 9.4e-13 76.6 56 69.6
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 9.4e-13 76.6 56 69.6
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 1.2e-12 76.3 58 67.2
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 1.2e-12 76.3 72 58.3
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 1.6e-12 75.9 44 79.5
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 1.6e-12 75.9 71 60.6
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 2.1e-12 75.5 67 64.2
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 3.6e-12 74.7 71 54.9
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 3.6e-12 74.7 54 72.2
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 4.7e-12 74.3 39 89.7
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 6.1e-12 73.9 40 87.5
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 8.0e-12 73.6 39 89.7
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 8.0e-12 73.6 54 70.4
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 8.0e-12 73.6 70 60.0
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 8.0e-12 73.6 58 63.8
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 1.4e-11 72.8 55 69.1
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 1.4e-11 72.8 56 66.1
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 2.3e-11 72.0 68 51.5
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 2.3e-11 72.0 72 58.3
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 2.3e-11 72.0 48 77.1
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 4.0e-11 71.2 70 57.1
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 4.0e-11 71.2 57 63.2
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 4.0e-11 71.2 40 85.0
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 4.0e-11 71.2 48 79.2
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 5.2e-11 70.9 39 87.2
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 6.7e-11 70.5 39 87.2
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 6.7e-11 70.5 39 87.2
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 6.7e-11 70.5 39 87.2
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 6.7e-11 70.5 39 87.2
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 6.7e-11 70.5 69 60.9
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 8.8e-11 70.1 69 59.4
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 8.8e-11 70.1 60 65.0
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 8.8e-11 70.1 60 61.7
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 1.1e-10 69.7 37 89.2
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 1.1e-10 69.7 57 64.9
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 1.1e-10 69.7 51 66.7
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 1.1e-10 69.7 79 55.7
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 1.1e-10 69.7 65 56.9
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 1.5e-10 69.3 48 64.6
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 1.5e-10 69.3 39 84.6
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 2.0e-10 68.9 71 57.7
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 2.0e-10 68.9 37 83.8
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 2.6e-10 68.6 41 82.9
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 2.6e-10 68.6 48 72.9
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 2.6e-10 68.6 59 64.4
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 3.3e-10 68.2 38 84.2
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 3.3e-10 68.2 38 84.2
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 3.3e-10 68.2 68 55.9
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 4.4e-10 67.8 38 84.2
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 4.4e-10 67.8 38 84.2
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 5.7e-10 67.4 69 56.5
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 7.5e-10 67.0 54 63.0
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 7.5e-10 67.0 54 63.0
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 7.5e-10 67.0 54 63.0
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 7.5e-10 67.0 69 62.3
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 9.7e-10 66.6 54 63.0
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 9.7e-10 66.6 39 74.4
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 1.7e-09 65.9 48 70.8
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.2e-09 65.5 64 57.8
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.2e-09 65.5 64 57.8
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 2.8e-09 65.1 38 81.6
Zm00001eb314380 Zea mays HOM05D007662 ORTHO05D009666 2.8e-09 65.1 60 61.7
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 3.7e-09 64.7 69 56.5
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 3.7e-09 64.7 40 75.0
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 4.8e-09 64.3 38 78.9
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 1.8e-08 62.4 49 69.4
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 1.8e-08 62.4 49 69.4
EL10Ac4g10342 Beta vulgaris HOM05D007662 ORTHO05D009666 4.1e-08 61.2 43 62.8
SEGI_07868 Sequoiadendron giganteum HOM05D007662 ORTHO05D009666 2.9e-06 55.1 68 44.1


User provided reference genes

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