Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.3e-120 436.4 225 100.0
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-77 293.5 225 75.6
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 6.8e-77 291.2 225 75.1
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.3e-72 276.2 224 69.2
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 4.2e-66 255.4 225 66.2
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.1e-63 247.3 225 64.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.8e-61 240.0 225 62.7
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.3e-56 223.8 226 59.7
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.5e-55 220.3 225 59.1
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 5.6e-55 218.4 229 59.0
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.3e-54 217.2 228 59.6
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 8.1e-54 214.5 225 56.4
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.4e-53 213.8 225 57.8
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.4e-53 213.8 225 57.8
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 5.3e-53 211.8 225 57.3
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 5.3e-53 211.8 225 57.3
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 6.9e-53 211.5 225 57.8
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.2e-52 210.7 225 56.4
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.2e-52 210.7 225 56.4
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.5e-52 210.3 225 55.6
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 2.0e-52 209.9 227 55.1
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 2.2e-51 206.5 229 57.2
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.9e-51 206.1 225 56.0
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 3.8e-51 205.7 229 57.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 3.8e-51 205.7 225 56.4
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 8.4e-51 204.5 225 54.7
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.1e-50 204.1 225 54.7
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.9e-50 203.4 228 54.4
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 2.4e-50 203.0 226 55.3
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 3.2e-50 202.6 223 54.3
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.2e-49 200.7 256 51.6
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 2.7e-49 199.5 225 55.1
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 6.0e-49 198.4 229 54.6
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.0e-48 197.6 229 55.0
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.3e-48 197.2 227 54.6
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.3e-48 197.2 229 54.6
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.3e-48 196.4 225 53.8
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.1e-47 194.1 228 53.1
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.5e-47 193.7 225 52.9
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.9e-47 193.4 224 53.1
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.5e-47 193.0 225 52.9
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 2.5e-47 193.0 228 53.5
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 3.3e-47 192.6 226 55.8
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 5.6e-47 191.8 218 54.1
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 1.3e-46 190.7 226 54.0
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.6e-46 190.3 225 53.8
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.6e-46 190.3 209 54.5
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.6e-46 190.3 225 51.6
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 3.7e-46 189.1 225 53.3
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 4.8e-46 188.7 225 53.3
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.8e-45 186.8 228 52.2
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 2.4e-45 186.4 224 52.2
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 2.4e-45 186.4 225 52.4
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 2.0e-44 183.3 225 52.4
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.0e-43 181.0 227 51.5
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.3e-43 180.6 225 50.2
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.3e-43 180.6 201 55.2
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.2e-43 179.9 172 61.0
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 2.5e-42 176.4 232 50.4
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.5e-42 176.4 209 52.6
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 4.2e-42 175.6 195 55.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.2e-42 175.6 172 61.0
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.5e-42 175.3 172 59.3
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 5.5e-42 175.3 205 53.7
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 7.1e-42 174.9 201 53.7
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 7.1e-42 174.9 201 53.7
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.2e-41 174.1 130 70.8
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.2e-41 174.1 268 44.0
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 3.5e-41 172.6 170 58.8
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 6.0e-41 171.8 231 49.4
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 6.0e-41 171.8 225 50.2
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 7.9e-41 171.4 171 58.5
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.0e-40 171.0 234 49.6
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 3.9e-40 169.1 170 58.8
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 6.7e-40 168.3 168 57.7
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 6.7e-40 168.3 166 59.0
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 8.7e-40 167.9 228 47.4
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.1e-39 167.5 193 55.4
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.9e-39 166.8 188 53.7
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 3.3e-39 166.0 238 47.1
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 4.3e-39 165.6 171 57.9
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 5.7e-39 165.2 195 53.3
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 7.4e-39 164.9 220 48.6
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 7.4e-39 164.9 170 57.6
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 9.6e-39 164.5 177 55.9
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.3e-38 164.1 216 49.1
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-38 163.7 170 55.3
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.6e-38 163.7 175 54.9
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 2.8e-38 162.9 205 49.8
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 6.3e-38 161.8 172 56.4
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 8.2e-38 161.4 239 45.6
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.1e-37 161.0 261 43.7
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.1e-37 161.0 224 48.2
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 5.3e-37 158.7 237 46.0
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 9.0e-37 157.9 170 57.6
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-36 157.1 235 48.1
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-36 157.1 235 48.1
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.6e-36 156.4 172 54.7
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 4.5e-36 155.6 227 48.5
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 5.9e-36 155.2 226 48.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 5.9e-36 155.2 226 48.2
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 5.9e-36 155.2 170 53.5
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.3e-35 154.1 192 49.5
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.3e-35 154.1 192 49.5
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.7e-35 153.7 210 48.1
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.7e-35 153.7 170 54.1
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.7e-35 153.7 173 53.2
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 2.2e-35 153.3 179 52.0
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.9e-35 152.9 227 46.7
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 2.9e-35 152.9 167 53.3
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 3.8e-35 152.5 227 47.6
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 6.5e-35 151.8 173 52.0
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.4e-34 150.6 210 45.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.4e-34 150.6 158 56.3
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-34 150.2 235 46.8
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 3.2e-34 149.4 212 48.1
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 9.3e-34 147.9 166 52.4
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 9.3e-34 147.9 169 52.1
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.2e-33 147.5 209 45.0
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.6e-33 147.1 180 50.0
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.1e-33 146.7 226 46.0
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 6.1e-33 145.2 181 49.7
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 7.9e-33 144.8 212 44.8
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 7.9e-33 144.8 226 43.8
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.3e-32 144.1 171 51.5
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.0e-32 142.9 131 62.6
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.9e-32 142.5 132 62.9
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 8.7e-32 141.4 136 60.3
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.9e-31 140.2 201 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 9.7e-31 137.9 169 47.9
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 9.7e-31 137.9 135 58.5
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 2.8e-30 136.3 204 44.6
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.1e-29 134.4 144 55.6
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 4.1e-29 132.5 167 49.7
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 5.3e-29 132.1 217 42.9
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 6.9e-29 131.7 239 40.6
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.2e-28 131.0 157 51.0
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.5e-28 130.6 190 46.8
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.5e-28 129.0 222 40.5
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 6.5e-27 125.2 144 50.7
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 1.2e-25 120.9 125 59.2
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 3.0e-24 116.3 78 75.6
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 5.1e-24 115.5 180 42.2
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.8e-24 114.8 171 42.7
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 2.0e-23 113.6 194 40.7
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.3e-23 112.5 171 43.9
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 7.4e-23 111.7 104 64.4
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.8e-22 109.8 182 39.0
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 3.7e-22 109.4 72 73.6
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 4.8e-22 109.0 117 53.8
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-21 107.5 131 50.4
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 4.1e-21 105.9 53 92.5
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.1e-18 97.8 68 72.1
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 1.4e-16 90.9 123 48.8
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 2.0e-12 77.0 114 45.6
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.2e-11 73.6 49 73.5
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 5.5e-10 68.9 110 43.6
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.6e-09 67.4 59 59.3
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 3.3e-07 59.7 33 78.8
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.8e-06 56.6 74 37.8
COL.COLO4_35030 Corchorus olitorius HOM05D000001 ORTHO05D010435 3.7e-06 56.2 32 78.1


User provided reference genes

Program Settings