Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 3904.4 1988 100.0
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 3687.9 2113 91.1
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 3343.9 2014 85.7
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 3316.2 1987 85.5
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2985.7 2021 76.7
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2985.3 2034 75.4
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2960.2 1985 76.1
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2925.2 1990 76.0
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2887.4 1999 74.3
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2882.8 1990 74.3
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2882.0 1992 74.8
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2872.0 1993 75.2
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2842.8 1992 73.8
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2840.1 2004 73.7
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2835.1 1993 74.6
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2828.1 1994 73.9
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2809.2 1992 73.0
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2803.9 1993 73.6
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2792.7 1994 73.2
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2789.2 1991 72.9
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2787.7 2008 72.9
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2774.6 1997 73.0
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2765.7 1993 72.1
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2755.7 1986 72.5
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2752.2 1989 72.6
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2750.7 1989 72.6
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2747.6 1989 72.2
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2744.5 2001 71.8
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2737.6 2039 71.1
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2720.3 2001 72.3
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2715.3 2007 71.0
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2713.3 1995 71.9
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2712.9 1994 71.0
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2707.9 2059 69.5
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2689.4 1999 71.0
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2682.1 1841 75.9
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2680.2 2103 67.2
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2667.5 1982 71.6
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2658.6 1993 69.7
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2657.9 1993 70.4
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2645.9 2000 70.5
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2645.5 1991 70.6
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2615.5 1994 69.6
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2602.0 2016 69.5
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2567.7 2106 65.4
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2551.5 1997 68.6
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2551.2 2025 68.1
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2532.7 2007 67.1
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2510.3 2002 67.1
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2498.4 2001 66.9
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2495.7 2010 66.4
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2479.9 1996 67.1
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2478.7 1989 65.9
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2478.0 1668 76.9
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2475.3 1999 64.7
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2460.6 2001 66.1
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2458.3 2004 65.3
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2447.5 1985 65.5
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2427.5 2063 64.5
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2409.0 2056 62.8
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2403.6 1995 65.5
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2403.2 1988 64.2
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2402.1 1990 64.2
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2396.3 1989 64.2
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2394.0 1988 63.1
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2392.8 1989 64.3
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2390.5 1992 64.1
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2389.8 1999 65.0
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2387.1 1989 64.2
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2353.9 2002 64.7
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2333.9 2004 62.8
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2315.8 1984 62.0
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2308.9 1982 62.8
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2303.9 2002 62.4
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2300.0 2014 61.9
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2296.5 1982 62.5
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2294.2 1983 62.3
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2291.9 2017 61.8
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2286.5 2008 62.8
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2283.4 1983 60.6
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2280.0 1911 65.4
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2278.4 1986 61.9
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2272.3 2014 61.6
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2222.2 2022 61.7
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2197.5 1888 63.2
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2189.1 2160 58.1
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2127.8 1784 63.5
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 2126.3 1983 59.4
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 2025.8 1419 74.6
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2014.2 1760 62.2
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2007.3 1663 63.7
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1960.3 2032 54.9
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1837.0 1722 60.8
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1827.4 1363 70.6
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1801.2 1485 64.6
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1717.2 2007 51.0
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1673.3 1236 70.1
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1583.5 1185 71.0
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1561.6 2031 47.5
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1506.5 1907 47.3
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1372.1 1604 48.9
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1362.1 1183 63.6
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1268.1 1405 51.3
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1235.7 774 80.1
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 0.0e+00 1182.5 774 78.0
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1165.2 775 77.0
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.9e-301 1039.3 1044 55.7
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.9e-288 996.5 834 61.8
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.4e-287 994.2 972 56.0
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 4.5e-281 972.6 1186 47.9
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 8.8e-277 958.4 1294 46.9
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 8.5e-272 941.8 2152 34.8
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 3.4e-260 903.3 2165 32.7
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 7.3e-223 779.2 1020 45.9
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 4.6e-209 733.4 1972 32.3
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.5e-191 675.2 647 60.0
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 4.3e-191 673.7 1937 31.2
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 2.5e-183 647.9 431 72.9
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 2.8e-182 644.4 542 62.4
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 7.4e-175 619.8 1621 31.6
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.7e-171 608.6 597 54.9
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 6.3e-150 537.0 319 81.8
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 2.3e-144 518.5 497 58.4
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 2.1e-129 468.8 535 51.6
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.8e-128 465.7 787 40.8
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 6.4e-126 457.2 381 68.8
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.0e-123 447.6 318 74.2
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 4.3e-106 391.3 357 55.5
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 7.3e-106 390.6 418 50.5
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.0e-103 382.5 219 84.0
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.7e-99 369.4 242 80.2
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 2.1e-97 362.5 284 68.7
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 3.5e-92 345.1 210 78.1
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 6.2e-89 334.3 190 86.3
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 3.8e-78 298.5 165 83.6
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 8.4e-78 297.4 298 55.7
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 4.6e-76 291.6 974 30.4
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-72 279.6 1093 26.8
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.4e-72 279.3 162 80.9
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 1.9e-69 269.6 333 48.6
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.2e-68 266.9 159 79.9
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 2.7e-68 265.8 443 43.3
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 6.1e-68 264.6 294 52.4
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 8.7e-67 260.8 263 55.5
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 2.7e-60 239.2 388 45.1
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 6.5e-54 218.0 240 53.3
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.4e-53 216.9 147 70.1
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.5e-53 216.1 326 39.0
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.7e-49 203.4 609 31.4
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.8e-48 199.9 125 72.8
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 2.8e-41 176.0 130 75.4
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 1.1e-40 174.1 465 34.2
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 1.0e-30 141.0 99 68.7
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 6.5e-30 138.3 126 61.9
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 3.2e-29 136.0 73 80.8
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 4.1e-24 119.0 114 62.3
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 4.1e-24 119.0 114 62.3
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 5.9e-23 115.2 150 48.7
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.0e-22 114.4 133 53.4
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.9e-22 112.8 122 62.3
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 5.0e-22 112.1 68 80.9
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 6.6e-22 111.7 148 54.1
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 8.6e-22 111.3 109 56.9
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-21 110.9 115 54.8
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.7e-17 97.1 68 66.2
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 7.8e-15 88.2 165 38.2
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 2.9e-14 86.3 44 84.1
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 2.9e-14 86.3 44 84.1
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 3.9e-14 85.9 110 44.5
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 2.6e-10 73.2 90 43.3
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 6.4e-09 68.6 88 40.9
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 1.1e-08 67.8 101 44.6
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 3.0e-06 59.7 120 35.8
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 5.0e-06 58.9 47 72.3
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 6.6e-06 58.5 105 37.1


User provided reference genes

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