Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 1.2e-73 279.6 136 100.0
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 2.3e-51 205.7 137 77.4
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 2.3e-51 205.7 162 64.8
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 5.4e-45 184.5 136 67.6
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 1.8e-43 179.5 145 64.8
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 7.4e-42 174.1 139 69.1
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 6.2e-41 171.0 142 62.7
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 4.0e-40 168.3 134 63.4
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 5.8e-39 164.5 142 62.0
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 7.6e-39 164.1 149 63.1
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 3.2e-37 158.7 117 69.2
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 9.3e-37 157.1 143 59.4
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 1.0e-35 153.7 142 61.3
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 1.1e-34 150.2 142 61.3
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 1.1e-34 150.2 143 59.4
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 1.5e-34 149.8 134 56.0
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 4.3e-34 148.3 140 60.7
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 9.6e-34 147.1 117 64.1
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 1.8e-32 142.9 149 58.4
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 6.9e-32 141.0 134 56.7
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 1.2e-31 140.2 148 54.7
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 3.4e-31 138.7 136 61.0
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 1.3e-30 136.7 123 62.6
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 1.7e-30 136.3 141 53.2
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 2.9e-30 135.6 155 51.0
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.9e-30 135.6 200 43.0
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 1.4e-29 133.3 138 50.0
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 3.2e-29 132.1 141 52.5
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 4.2e-29 131.7 144 52.8
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 1.6e-28 129.8 141 56.0
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 2.1e-28 129.4 139 50.4
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 2.7e-28 129.0 137 51.8
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 4.6e-28 128.3 120 61.7
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 5.1e-27 124.8 139 58.3
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 6.7e-27 124.4 140 50.0
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 6.7e-27 124.4 149 52.3
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 1.9e-26 122.9 142 49.3
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 3.3e-26 122.1 114 57.0
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 9.7e-26 120.6 145 51.7
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 6.3e-25 117.9 147 51.0
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 1.1e-24 117.1 168 47.6
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 9.0e-24 114.0 138 50.7
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 2.6e-23 112.5 104 62.5
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 7.6e-23 110.9 167 45.5
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 1.0e-22 110.5 169 45.6
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 1.0e-22 110.5 137 51.8
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 1.3e-22 110.2 120 55.0
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 1.7e-22 109.8 163 47.2
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 5.0e-22 108.2 164 47.0
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 1.4e-21 106.7 139 52.5
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 1.4e-21 106.7 139 52.5
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 1.9e-21 106.3 163 44.8
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 2.5e-21 105.9 163 44.2
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 2.5e-21 105.9 118 56.8
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 4.2e-21 105.1 155 47.1
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 9.4e-21 104.0 167 43.1
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 1.2e-20 103.6 106 57.5
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 1.2e-20 103.6 143 46.2
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 1.6e-20 103.2 155 46.5
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 1.6e-20 103.2 155 46.5
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 2.7e-20 102.4 116 59.5
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 2.7e-20 102.4 137 49.6
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 4.6e-20 101.7 155 46.5
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 4.6e-20 101.7 92 64.1
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 6.1e-20 101.3 155 45.2
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 7.9e-20 100.9 159 42.8
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 5.1e-19 98.2 167 41.3
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 1.1e-18 97.1 140 47.1
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 3.3e-18 95.5 116 53.4
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 2.2e-17 92.8 131 43.5
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 2.8e-17 92.4 114 51.8
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 4.1e-16 88.6 145 42.1
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 9.1e-16 87.4 125 42.4
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 1.5e-15 86.7 145 44.1
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 3.2e-13 79.0 108 50.9
C03p46400 Brassica napus HOM05D007392 ORTHO05D009181 9.4e-13 77.4 141 39.7
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 1.6e-12 76.6 127 38.6
Migut.N00543 Erythranthe guttata HOM05D007392 ORTHO05D009181 1.6e-12 76.6 133 41.4
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.7e-12 75.9 148 34.5
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 4.7e-12 75.1 144 36.8
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 6.1e-12 74.7 135 41.5
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 7.9e-12 74.3 137 39.4
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 7.9e-12 74.3 148 37.2
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 1.0e-11 73.9 138 40.6
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 2.3e-11 72.8 147 36.1
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.0e-11 72.4 146 35.6
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 3.0e-11 72.4 144 34.7
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 3.9e-11 72.0 143 35.7
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 3.9e-11 72.0 148 35.1
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 3.9e-11 72.0 143 35.0
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.8e-11 70.9 147 35.4
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 8.8e-11 70.9 147 34.0
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 8.8e-11 70.9 144 34.7
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 1.1e-10 70.5 143 37.8
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.5e-10 70.1 142 34.5
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 2.0e-10 69.7 144 34.7
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 2.0e-10 69.7 143 35.0
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 2.0e-10 69.7 157 35.7
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.6e-10 69.3 154 34.4
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.6e-10 69.3 143 34.3
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 5.7e-10 68.2 149 33.6
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 5.7e-10 68.2 95 46.3
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 5.7e-10 68.2 137 36.5
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 5.7e-10 68.2 147 34.0
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 7.4e-10 67.8 96 45.8
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 7.4e-10 67.8 147 35.4
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 7.4e-10 67.8 142 35.9
BolC5t34105H Brassica oleracea HOM05D001472 ORTHO05D007811 9.7e-10 67.4 120 42.5
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 9.7e-10 67.4 144 35.4
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.3e-09 67.0 142 33.1
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.3e-09 67.0 141 31.2
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 1.7e-09 66.6 96 46.9
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.8e-09 65.9 154 31.8
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 2.8e-09 65.9 146 34.9
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 2.8e-09 65.9 135 36.3
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 3.7e-09 65.5 83 49.4
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 3.7e-09 65.5 142 36.6
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 4.8e-09 65.1 145 35.2
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 4.8e-09 65.1 142 34.5
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 4.8e-09 65.1 154 33.1
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 4.8e-09 65.1 151 35.8
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 4.8e-09 65.1 150 32.7
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 4.8e-09 65.1 150 34.0
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 6.3e-09 64.7 151 34.4
BraA05t22411Z Brassica rapa HOM05D001472 ORTHO05D007811 8.2e-09 64.3 121 43.0
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 8.2e-09 64.3 147 33.3
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 8.2e-09 64.3 135 36.3
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 1.1e-08 63.9 142 34.5
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.4e-08 63.5 146 33.6
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 1.4e-08 63.5 141 35.5
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.8e-08 63.2 142 33.1
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 2.4e-08 62.8 147 32.7
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 3.1e-08 62.4 147 32.0
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 4.1e-08 62.0 147 34.0
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 5.3e-08 61.6 140 35.0
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 5.3e-08 61.6 152 32.2
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 5.3e-08 61.6 144 33.3
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 5.3e-08 61.6 145 34.5
CARHR045140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 9.1e-08 60.8 83 45.8
FAN05G3304 Fragaria x ananassa HOM05D067380 ORTHO05D009181 9.1e-08 60.8 56 60.7
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 9.1e-08 60.8 143 34.3
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 9.1e-08 60.8 148 35.8
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.2e-07 60.5 129 32.6
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.2e-07 60.5 153 31.4
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.2e-07 60.5 148 34.5
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.5e-07 60.1 152 30.3
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.0e-07 59.7 150 32.0
FAN05G0870 Fragaria x ananassa HOM05D067380 ORTHO05D009181 3.4e-07 58.9 56 58.9
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 3.4e-07 58.9 147 32.7
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.5e-07 58.5 123 31.7
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 4.5e-07 58.5 151 32.5
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 4.5e-07 58.5 149 31.5
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 5.9e-07 58.2 147 32.7
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.9e-07 58.2 147 32.7
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 5.9e-07 58.2 138 31.9
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 7.7e-07 57.8 133 33.8
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 7.7e-07 57.8 138 31.9
C03p46410 Brassica napus HOM05D007392 ORTHO05D009181 1.3e-06 57.0 45 64.4
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 1.3e-06 57.0 146 33.6
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 1.3e-06 57.0 149 30.9
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.7e-06 56.6 141 31.2
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 1.7e-06 56.6 149 32.2
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.7e-06 56.6 147 32.7
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.2e-06 56.2 149 30.9
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 2.9e-06 55.8 139 31.7
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.9e-06 55.8 147 32.0
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.9e-06 55.8 147 32.0
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 2.9e-06 55.8 169 30.2
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.9e-06 55.8 100 33.0
C03p92800 Brassica napus HOM05D007392 ORTHO05D009181 3.8e-06 55.5 64 56.2
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 3.8e-06 55.5 151 29.8
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 3.8e-06 55.5 149 32.2
TAR381G0583 Trochodendron aralioides HOM05D000488 ORTHO05D000347 5.0e-06 55.1 43 60.5
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 5.0e-06 55.1 136 37.5
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 6.5e-06 54.7 144 36.1
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 6.5e-06 54.7 143 35.7
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 8.5e-06 54.3 120 33.3
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 8.5e-06 54.3 141 31.9


User provided reference genes

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