Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 4.0e-162 574.7 290 100.0
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 1.9e-111 406.4 298 81.5
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 1.3e-104 383.6 300 74.3
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 4.2e-87 325.5 304 65.1
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 1.5e-84 317.0 303 62.4
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 2.6e-81 306.2 293 62.8
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 3.5e-81 305.8 281 64.4
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 6.5e-80 301.6 297 60.9
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 2.1e-78 296.6 294 59.2
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 4.7e-78 295.4 294 58.8
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 1.4e-77 293.9 294 58.5
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 2.2e-75 286.6 300 60.7
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 1.7e-72 276.9 299 58.5
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 1.1e-71 274.2 284 58.5
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 5.5e-71 271.9 295 57.3
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 9.4e-71 271.2 295 56.6
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 9.4e-71 271.2 295 56.3
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 1.2e-70 270.8 295 56.6
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 6.1e-70 268.5 291 57.0
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 5.2e-69 265.4 311 54.7
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 1.5e-68 263.8 292 56.2
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 2.0e-68 263.5 296 55.4
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 2.6e-68 263.1 293 60.8
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 3.7e-67 259.2 281 55.2
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 4.8e-67 258.8 285 58.2
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 3.1e-66 256.1 294 54.1
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 4.1e-66 255.8 292 55.5
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 4.1e-66 255.8 293 55.3
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 2.0e-65 253.4 282 57.4
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 5.0e-64 248.8 297 54.2
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 5.0e-64 248.8 295 54.6
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 1.9e-63 246.9 278 55.0
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 9.5e-63 244.6 290 54.1
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 3.6e-62 242.7 292 55.5
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 1.8e-61 240.4 279 53.4
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 2.3e-61 240.0 304 52.6
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 8.8e-61 238.0 281 55.5
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 2.0e-60 236.9 299 52.2
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 7.5e-60 235.0 283 52.3
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 7.5e-60 235.0 286 51.4
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 1.7e-59 233.8 268 57.5
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 2.2e-59 233.4 298 49.7
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 2.2e-59 233.4 298 49.7
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 6.3e-59 231.9 291 54.0
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 1.7e-56 223.8 299 52.2
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 1.5e-55 220.7 299 49.8
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 4.3e-55 219.2 292 51.7
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 5.6e-55 218.8 293 48.8
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 1.6e-54 217.2 294 49.0
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 3.0e-53 213.0 281 48.8
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 8.9e-53 211.5 285 52.3
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.6e-52 209.9 304 47.4
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 1.7e-51 207.2 358 43.9
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 2.2e-51 206.8 333 46.2
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 2.9e-51 206.5 311 46.0
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 4.9e-51 205.7 344 45.9
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 1.8e-50 203.8 238 58.0
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 2.4e-50 203.4 277 48.7
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 4.1e-50 202.6 321 45.5
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 5.4e-50 202.2 287 48.4
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 1.2e-49 201.1 346 45.4
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 7.8e-49 198.4 283 49.1
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 3.0e-48 196.4 278 47.8
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.1e-47 194.5 256 50.8
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 2.8e-46 189.9 320 44.1
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 4.7e-46 189.1 316 44.9
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 6.2e-46 188.7 239 51.5
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 2.3e-45 186.8 287 46.3
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 5.2e-45 185.7 304 45.1
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 3.4e-44 183.0 290 45.5
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 5.8e-44 182.2 308 42.2
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 5.8e-44 182.2 308 42.2
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 2.2e-43 180.3 301 44.2
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 2.9e-43 179.9 210 55.7
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.9e-43 179.9 328 43.9
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 3.7e-43 179.5 288 42.7
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 3.7e-43 179.5 328 44.2
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 4.9e-43 179.1 307 42.0
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 4.9e-43 179.1 307 42.0
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 1.1e-42 177.9 298 44.0
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 4.1e-42 176.0 330 43.6
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 5.4e-42 175.6 268 46.3
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 2.0e-41 173.7 344 40.7
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 2.0e-41 173.7 271 46.1
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 6.0e-41 172.2 278 44.2
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 7.8e-41 171.8 227 50.7
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 1.3e-40 171.0 308 38.3
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 2.5e-39 166.8 306 42.2
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 3.3e-39 166.4 284 40.8
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 1.2e-38 164.5 224 52.2
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 4.7e-38 162.5 241 49.0
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 1.5e-36 157.5 240 44.2
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 1.4e-34 151.0 294 36.4
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 3.9e-32 142.9 209 46.4
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 5.1e-32 142.5 220 45.9
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.1e-31 141.4 263 40.3
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.1e-31 141.4 263 40.3
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 1.8e-29 134.0 126 57.9
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 1.8e-29 134.0 229 44.1
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.0e-24 118.2 216 39.4
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 7.3e-15 85.5 155 43.2
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.0e-12 77.4 96 50.0
C01p22270 Brassica napus HOM05D007298 ORTHO05D009226 1.0e-08 65.1 132 40.9
BcaC09g50700 Brassica carinata HOM05D007298 ORTHO05D009226 1.9e-07 60.8 103 41.7
BolC1t02157H Brassica oleracea HOM05D007298 ORTHO05D009226 1.9e-07 60.8 103 41.7
BcaC01g06536 Brassica carinata HOM05D007298 ORTHO05D009226 2.5e-07 60.5 105 41.0
BcaC09g50696 Brassica carinata HOM05D007298 ORTHO05D009226 4.3e-07 59.7 60 50.0
C01p22230 Brassica napus HOM05D007298 ORTHO05D009226 4.3e-07 59.7 60 50.0
BolC1t02153H Brassica oleracea HOM05D007298 ORTHO05D009226 4.3e-07 59.7 60 50.0
SEGI_13333 Sequoiadendron giganteum HOM05D007298 ORTHO05D009226 8.1e-06 55.5 177 33.3


User provided reference genes

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