Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 2.1e-169 599.0 305 100.0
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 7.6e-164 580.5 304 97.4
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.4e-112 410.2 269 78.1
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 4.0e-112 408.7 294 74.1
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 3.6e-105 385.6 294 67.3
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.4e-103 378.6 296 67.2
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.6e-100 368.6 304 67.1
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.7e-99 366.7 293 65.9
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.5e-98 362.8 296 64.9
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.6e-97 360.1 288 65.3
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.5e-95 353.6 300 63.3
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.5e-95 351.3 291 63.6
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 7.5e-95 351.3 291 63.9
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 7.5e-95 351.3 288 64.2
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.2e-94 349.7 291 63.9
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.9e-94 348.6 271 67.5
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.4e-93 347.1 290 62.4
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.9e-93 346.7 290 62.1
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 9.2e-93 344.4 289 60.2
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.2e-92 344.0 288 60.8
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.7e-92 342.8 289 60.2
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.0e-91 340.9 288 62.5
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.3e-91 340.5 289 59.9
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.3e-91 340.5 294 64.3
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.1e-91 338.6 286 62.2
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.3e-90 334.7 297 60.6
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.1e-89 333.2 300 60.3
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 2.0e-87 326.6 266 63.2
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.4e-87 325.9 301 62.8
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 7.6e-87 324.7 295 59.7
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.3e-86 323.9 297 58.9
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 1.3e-86 323.9 267 63.7
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 2.9e-86 322.8 251 65.7
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 4.9e-86 322.0 273 62.6
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 6.4e-86 321.6 294 57.5
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.9e-85 320.1 250 68.4
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 7.1e-85 318.2 301 56.5
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 2.1e-84 316.6 295 59.7
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.7e-84 316.2 290 60.3
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 2.7e-84 316.2 294 56.8
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 4.6e-84 315.5 296 57.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 4.6e-84 315.5 283 59.4
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 7.8e-84 314.7 291 60.1
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 3.0e-83 312.8 253 62.8
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 3.0e-83 312.8 290 59.7
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.1e-82 310.8 290 59.7
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 1.5e-82 310.5 316 57.0
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 3.3e-82 309.3 286 56.3
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 6.2e-81 305.1 295 57.3
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 3.1e-80 302.8 283 61.8
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.5e-79 300.4 290 54.8
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 4.4e-79 298.9 294 55.1
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 5.8e-79 298.5 289 53.6
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 9.9e-79 297.7 289 55.0
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.3e-78 297.4 292 55.1
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 2.9e-78 296.2 294 54.8
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 2.9e-78 296.2 274 56.2
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 3.8e-78 295.8 295 55.6
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 8.4e-78 294.7 301 53.8
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.1e-77 294.3 292 56.2
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 3.2e-77 292.7 270 57.4
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 5.4e-77 292.0 292 54.8
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 5.4e-77 292.0 288 53.8
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 7.8e-76 288.1 295 53.9
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.3e-75 287.3 295 52.9
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.3e-75 287.3 290 53.4
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.7e-75 287.0 295 52.9
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 2.3e-75 286.6 289 53.3
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 2.3e-75 286.6 289 53.3
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 2.3e-75 286.6 272 57.0
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 2.3e-75 286.6 316 54.4
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 2.3e-75 286.6 292 51.4
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.9e-75 285.8 294 54.4
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 3.9e-75 285.8 293 53.2
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 3.9e-75 285.8 294 54.8
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 5.1e-75 285.4 268 55.6
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 6.6e-75 285.0 289 52.2
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 6.6e-75 285.0 289 52.2
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 6.6e-75 285.0 289 52.2
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 8.7e-75 284.6 294 54.8
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.1e-74 284.3 296 51.7
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 4.3e-74 282.3 290 51.0
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 4.3e-74 282.3 280 54.3
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.3e-74 282.3 291 52.2
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.3e-74 282.3 289 51.2
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 7.3e-74 281.6 290 51.0
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 7.3e-74 281.6 290 51.0
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 7.3e-74 281.6 290 51.0
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 9.6e-74 281.2 295 52.2
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.3e-73 280.8 291 52.6
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.3e-73 280.8 267 56.2
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 2.1e-73 280.0 271 55.4
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.8e-73 279.6 279 53.0
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.8e-73 279.6 293 50.9
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.8e-73 279.6 290 52.8
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.8e-73 279.6 295 51.9
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 3.6e-73 279.3 294 50.3
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 6.2e-73 278.5 290 52.1
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 6.2e-73 278.5 290 52.1
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-72 277.7 290 52.4
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.4e-72 277.3 290 52.4
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.4e-72 277.3 290 50.7
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.8e-72 276.9 290 51.0
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 5.3e-72 275.4 288 51.4
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 5.3e-72 275.4 290 52.4
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.5e-71 272.3 304 50.0
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.5e-71 272.3 289 50.5
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 5.8e-71 271.9 294 53.4
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 5.8e-71 271.9 299 49.8
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.2e-70 270.0 291 50.5
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 2.2e-70 270.0 292 50.0
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.8e-70 269.2 292 52.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 4.9e-70 268.9 289 50.5
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.9e-70 268.9 302 48.7
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 6.4e-70 268.5 290 49.7
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 8.4e-70 268.1 277 52.0
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 2.4e-69 266.5 303 46.9
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 5.4e-69 265.4 294 51.7
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.2e-68 264.2 292 49.3
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 2.1e-68 263.5 295 51.2
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.5e-68 262.7 288 48.3
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.1e-66 257.7 392 41.3
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 9.6e-66 254.6 291 46.7
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.8e-65 252.3 232 58.6
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 3.1e-64 249.6 232 58.2
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 4.5e-63 245.7 294 47.3
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 2.2e-62 243.4 231 51.9
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 5.1e-59 232.3 294 44.6
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.3e-58 229.6 295 45.8
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 7.4e-58 228.4 294 44.2
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 9.6e-58 228.0 295 44.7
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.6e-55 219.9 298 43.6
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 2.9e-54 216.5 300 45.7
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.1e-53 214.5 290 42.4
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 5.1e-51 205.7 174 59.8
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 9.7e-50 201.4 262 42.0
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 1.6e-49 200.7 305 42.0
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.8e-48 197.2 165 61.2
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 3.4e-47 193.0 171 60.8
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.1e-37 161.4 176 50.6
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.5e-34 151.0 180 48.3
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 7.4e-34 148.7 188 46.8
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.8e-33 146.0 129 57.4
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-32 144.4 129 56.6
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 8.5e-30 135.2 117 62.4
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.3e-24 115.9 91 67.0
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 9.1e-24 115.2 109 56.9
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 4.2e-21 106.3 272 29.0
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 8.0e-20 102.1 122 45.9
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.4e-19 101.3 299 28.8
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 3.0e-19 100.1 93 55.9
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 5.2e-19 99.4 78 60.3
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-18 98.2 90 56.7
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-18 98.2 90 56.7
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 4.4e-18 96.3 79 59.5
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.5e-18 95.5 99 53.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 2.7e-15 87.0 79 50.6
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 3.2e-13 80.1 131 40.5
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 8.0e-12 75.5 107 36.4
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 3.8e-06 56.6 77 41.6
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 6.5e-06 55.8 37 70.3


User provided reference genes

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