Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.4e-122 442.2 222 100.0
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.3e-117 426.4 222 95.9
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.6e-115 419.5 224 95.5
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 6.9e-114 414.1 225 93.8
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.0e-89 332.8 238 74.4
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 5.9e-81 304.7 165 89.1
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 7.7e-81 304.3 195 77.4
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 8.5e-80 300.8 213 71.4
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 5.5e-79 298.1 223 68.2
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 7.2e-79 297.7 221 69.2
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 7.2e-79 297.7 163 86.5
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 1.2e-78 297.0 213 70.4
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 1.6e-78 296.6 222 69.8
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.7e-78 295.8 238 66.4
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 3.6e-78 295.4 218 70.2
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.0e-77 293.9 165 84.8
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 1.8e-77 293.1 203 70.0
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 2.3e-77 292.7 212 70.3
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 4.0e-77 292.0 209 69.9
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 2.0e-76 289.7 176 78.4
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 2.0e-76 289.7 165 83.6
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 2.6e-76 289.3 221 67.9
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 4.4e-76 288.5 214 65.9
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 5.7e-76 288.1 215 67.0
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 7.5e-76 287.7 165 82.4
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 9.7e-76 287.3 222 65.8
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.3e-75 287.0 218 64.7
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 2.2e-75 286.2 218 64.2
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 2.2e-75 286.2 188 72.9
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 6.3e-75 284.6 212 68.4
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 6.3e-75 284.6 214 66.4
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 6.3e-75 284.6 214 65.0
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 6.3e-75 284.6 225 65.3
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 6.3e-75 284.6 198 70.7
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 8.2e-75 284.3 209 66.5
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 3.1e-74 282.3 212 66.5
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 1.2e-73 280.4 184 72.8
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 1.6e-73 280.0 184 72.8
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 2.7e-73 279.3 196 67.9
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 4.5e-73 278.5 227 65.2
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 5.9e-73 278.1 170 76.5
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 1.0e-72 277.3 167 76.6
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.3e-72 276.9 180 72.8
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 1.7e-72 276.6 197 68.0
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 2.2e-72 276.2 160 78.1
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 2.2e-72 276.2 161 78.9
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 2.9e-72 275.8 220 62.7
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 5.0e-72 275.0 168 78.6
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 8.5e-72 274.2 237 60.8
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 1.1e-71 273.9 164 76.8
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 1.5e-71 273.5 161 78.9
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 1.5e-71 273.5 161 77.6
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 1.9e-71 273.1 211 65.4
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 2.5e-71 272.7 213 64.8
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 4.2e-71 271.9 210 63.8
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 5.5e-71 271.6 207 67.1
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 7.2e-71 271.2 212 62.7
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 1.6e-70 270.0 228 62.7
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 2.1e-70 269.6 216 62.5
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 4.7e-70 268.5 188 69.1
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 1.0e-69 267.3 204 65.7
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 1.4e-69 266.9 157 77.7
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 1.8e-69 266.5 180 71.7
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 2.3e-69 266.2 207 61.8
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 2.3e-69 266.2 160 77.5
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 4.0e-69 265.4 224 62.1
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 5.2e-69 265.0 201 65.7
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.2e-68 263.8 185 65.4
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.0e-68 263.1 204 64.7
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.0e-68 263.1 204 64.7
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 2.6e-68 262.7 179 67.6
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 4.4e-68 261.9 162 75.3
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 4.4e-68 261.9 177 66.7
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 3.7e-67 258.8 161 72.7
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 2.4e-66 256.1 192 65.6
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 1.3e-64 250.4 177 65.0
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.7e-64 250.0 164 69.5
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 1.7e-64 250.0 214 58.4
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 2.2e-64 249.6 221 61.5
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 2.1e-62 243.0 164 68.9
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 3.0e-61 239.2 165 69.7
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 6.3e-59 231.5 165 62.4
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 1.4e-58 230.3 165 62.4
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 4.1e-58 228.8 165 61.8
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 4.1e-58 228.8 165 61.8
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 4.1e-58 228.8 165 61.8
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 7.0e-58 228.0 165 63.0
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 9.2e-58 227.6 140 75.7
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 9.2e-58 227.6 161 64.0
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 9.2e-58 227.6 167 64.1
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 1.2e-57 227.3 157 65.0
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 7.7e-57 224.6 161 62.7
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 7.7e-57 224.6 161 62.7
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 5.0e-56 221.9 188 54.3
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 3.3e-55 219.2 186 58.1
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 1.4e-53 213.8 173 59.5
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 6.8e-53 211.5 177 58.2
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 4.4e-52 208.8 145 67.6
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 7.8e-49 198.0 166 56.0
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 1.3e-48 197.2 122 72.1
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 2.9e-43 179.5 161 60.2
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 3.7e-43 179.1 171 55.0
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 4.9e-43 178.7 122 68.9
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 1.1e-42 177.6 162 53.1
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 7.0e-42 174.9 112 73.2
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 1.6e-41 173.7 128 68.0
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 3.5e-41 172.6 167 50.3
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 2.3e-40 169.9 111 73.9
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.5e-39 167.2 106 74.5
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 2.2e-35 153.3 90 78.9
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 4.9e-35 152.1 169 45.6
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 8.6e-32 141.4 127 54.3
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 3.1e-29 132.9 123 52.0
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.5e-25 119.4 59 93.2
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 4.3e-23 112.5 161 38.5
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 2.1e-22 110.2 201 31.3
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 5.8e-20 102.1 53 84.9
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 8.4e-19 98.2 164 35.4
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 6.6e-16 88.6 57 68.4
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 1.6e-14 84.0 54 68.5
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 1.6e-14 84.0 54 68.5
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 9.9e-12 74.7 67 53.7
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.1e-10 71.2 38 84.2
Sabra16G0183400 Salix brachista HOM05D002857 ORTHO05D008347 1.5e-07 60.8 75 46.7


User provided reference genes

Program Settings