Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009504 Carpinus fangiana HOM05D011467 ORTHO05D043802 0.0e+00 1603.6 896 100.0
Cpa.g.sc9.143 Carica papaya HOM05D007464 ORTHO05D009388 6.2e-12 77.4 202 33.2
Dinv30183 Davidia involucrata HOM05D000413 ORTHO05D000292 1.1e-11 76.6 126 36.5
BcaB08g36968 Brassica carinata HOM05D002893 ORTHO05D003387 5.2e-11 74.3 118 37.3
BcaNung03174 Brassica carinata HOM05D002893 ORTHO05D003387 2.6e-10 72.0 118 36.4
Thhalv10012767m.g Eutrema salsugineum HOM05D002893 ORTHO05D003387 2.6e-10 72.0 134 35.8
BcaC04g19051 Brassica carinata HOM05D002893 ORTHO05D003387 7.5e-10 70.5 115 37.4
CARHR199110 Cardamine hirsuta HOM05D002893 ORTHO05D003387 7.5e-10 70.5 129 35.7
BcaB01g06338 Brassica carinata HOM05D002893 ORTHO05D003387 9.9e-10 70.1 118 35.6
AT5G14230 Arabidopsis thaliana HOM05D002893 ORTHO05D003387 1.3e-09 69.7 134 35.1
MCO14G492 Micromonas commoda HOM05D000227 ORTHO05D000152 1.3e-09 69.7 138 37.0
C09p62930 Brassica napus HOM05D002893 ORTHO05D003387 2.9e-09 68.6 115 36.5
BolC9t59130H Brassica oleracea HOM05D002893 ORTHO05D003387 2.9e-09 68.6 115 36.5
SGA_v2.0_scaffold18G08282 Striga asiatica HOM05D000413 ORTHO05D000292 2.9e-09 68.6 155 31.6
BraA10t44489Z Brassica rapa HOM05D002893 ORTHO05D003387 6.4e-09 67.4 115 35.7
BcaB01g05300 Brassica carinata HOM05D002893 ORTHO05D003387 8.3e-09 67.0 118 35.6
C03p07490 Brassica napus HOM05D002893 ORTHO05D003387 8.3e-09 67.0 118 35.6
BolC3t13250H Brassica oleracea HOM05D002893 ORTHO05D003387 8.3e-09 67.0 118 35.6
A10p24240 Brassica napus HOM05D002893 ORTHO05D003387 1.4e-08 66.2 110 36.4
C02p06620 Brassica napus HOM05D002893 ORTHO05D003387 1.9e-08 65.9 121 35.5
SalBow8G1069 Salvia bowleyana HOM05D002893 ORTHO05D003387 1.9e-08 65.9 141 33.3
Sp6g29800 Schrenkiella parvula HOM05D002893 ORTHO05D003387 1.9e-08 65.9 118 36.4
A03p06490 Brassica napus HOM05D002893 ORTHO05D003387 5.4e-08 64.3 113 36.3
BraA03t09981Z Brassica rapa HOM05D002893 ORTHO05D003387 5.4e-08 64.3 113 36.3
Nitab4.5_0006110g0030 Nicotiana tabacum HOM05D000413 ORTHO05D000292 5.4e-08 64.3 190 28.9
Nitab4.5_0006940g0020 Nicotiana tabacum HOM05D000413 ORTHO05D000292 5.4e-08 64.3 190 28.9
Os03g0680400 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 5.4e-08 64.3 165 30.3
ECA246G4084 Erigeron canadensis HOM05D000413 ORTHO05D000292 7.1e-08 63.9 193 29.0
Nitab4.5_0003813g0040 Nicotiana tabacum HOM05D000413 ORTHO05D000292 9.2e-08 63.5 206 28.2
arahy.Tifrunner.gnm1.ann1.KRYP2Z Arachis hypogaea HOM05D007464 ORTHO05D009388 1.2e-07 63.2 200 29.5
HanXRQChr12g0372301 Helianthus annuus HOM05D002893 ORTHO05D003387 1.6e-07 62.8 126 30.2
Nitab4.5_0000010g0030 Nicotiana tabacum HOM05D000413 ORTHO05D000292 1.6e-07 62.8 208 27.9
Cre13.g573550 Chlamydomonas reinhardtii HOM05D001789 ORTHO05D043802 2.1e-07 62.4 217 29.0
Nitab4.5_0009064g0010 Nicotiana tabacum HOM05D002192 ORTHO05D002173 2.1e-07 62.4 183 27.3
Thecc.01G287900 Theobroma cacao HOM05D007464 ORTHO05D009388 2.1e-07 62.4 201 28.4
Lsat_1_v5_gn_5_32241 Lactuca sativa HOM05D000413 ORTHO05D000292 2.7e-07 62.0 191 28.3
QL02p071998 Quercus lobata HOM05D002893 ORTHO05D003387 2.7e-07 62.0 140 31.4
Oeu058769.1 Olea europaea HOM05D002893 ORTHO05D003387 3.5e-07 61.6 148 33.8
SGA_v2.0_scaffold4G02191 Striga asiatica HOM05D000413 ORTHO05D000292 4.6e-07 61.2 117 35.9
CDE06G0784 Ceratophyllum demersum HOM05D001789 ORTHO05D001755 6.0e-07 60.8 218 28.9
Hund10840 Selenicereus undatus HOM05D002893 ORTHO05D003387 7.8e-07 60.5 187 28.9
Aqoxy3G03319 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 1.0e-06 60.1 136 31.6
Carub.0006s1243 Capsella rubella HOM05D002893 ORTHO05D003387 1.0e-06 60.1 97 38.1
Sabra16G0214900 Salix brachista HOM05D002893 ORTHO05D003387 1.0e-06 60.1 123 31.7
Gohir.D01G143366 Gossypium hirsutum HOM05D000413 ORTHO05D000292 1.3e-06 59.7 158 29.1
SalBow8G4368 Salvia bowleyana HOM05D000413 ORTHO05D000292 1.3e-06 59.7 187 26.2
SalBow8G4447 Salvia bowleyana HOM05D000413 ORTHO05D000292 1.3e-06 59.7 187 26.2
Actinidia15691 Actinidia chinensis HOM05D000413 ORTHO05D000292 1.7e-06 59.3 164 28.0
ECA238G2814 Erigeron canadensis HOM05D001789 ORTHO05D001755 2.3e-06 58.9 244 28.3
BcaC03g13510 Brassica carinata HOM05D002893 ORTHO05D003387 3.9e-06 58.2 72 40.3
Nitab4.5_0001800g0160 Nicotiana tabacum HOM05D002192 ORTHO05D002173 3.9e-06 58.2 175 25.7
Os12g0599900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 3.9e-06 58.2 139 33.1
PGR102G0201 Punica granatum HOM05D000413 ORTHO05D000292 3.9e-06 58.2 155 30.3
Solyc06g076050.4 Solanum lycopersicum HOM05D002192 ORTHO05D002173 3.9e-06 58.2 185 27.0
Sopen06g032460 Solanum pennellii HOM05D002192 ORTHO05D002173 3.9e-06 58.2 185 27.0
Duzib133G1000 Durio zibethinus HOM05D007464 ORTHO05D009388 5.1e-06 57.8 203 28.6
Mapoly0099s0050 Marchantia polymorpha HOM05D011467 ORTHO05D014661 5.1e-06 57.8 233 27.9
PSO675G1802 Papaver somniferum HOM05D001789 ORTHO05D001755 5.1e-06 57.8 140 32.9
Ah.12g059400 Amaranthus hybridus HOM05D002893 ORTHO05D003387 6.6e-06 57.4 140 29.3
Ah.12g063790 Amaranthus hybridus HOM05D000413 ORTHO05D000292 6.6e-06 57.4 143 28.0
AagrBONN_evm.TU.Sc2ySwM_340.473 Anthoceros agrestis HOM05D018826 ORTHO05D019645 6.6e-06 57.4 167 32.9
Cre16.g662951 Chlamydomonas reinhardtii HOM05D013933 ORTHO05D015601 6.6e-06 57.4 165 33.3
Os03g0680600 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 6.6e-06 57.4 131 35.1
FAN15G0471 Fragaria x ananassa HOM05D000413 ORTHO05D000292 8.6e-06 57.0 192 25.5
FAN25G0473 Fragaria x ananassa HOM05D002192 ORTHO05D002173 8.6e-06 57.0 185 25.9
Nitab4.5_0019790g0010 Nicotiana tabacum HOM05D002192 ORTHO05D002173 8.6e-06 57.0 178 27.5
TAR362G1190 Trochodendron aralioides HOM05D002547 ORTHO05D002649 8.6e-06 57.0 121 32.2


User provided reference genes

Program Settings