Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 2129.8 1121 100.0
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 2105.9 1121 98.6
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1851.6 1130 85.6
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1848.9 1138 85.2
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1797.3 1131 82.2
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1780.0 1128 82.0
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1778.8 1129 81.8
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1778.1 1136 80.7
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1776.5 1131 81.8
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1774.2 1137 80.6
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1770.4 1125 82.0
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1770.0 1136 82.0
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1767.7 1138 80.3
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1765.4 1128 81.4
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1765.0 1128 81.7
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1763.4 1125 81.1
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1761.9 1129 81.1
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1755.3 1125 80.4
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1752.3 1128 80.5
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1750.7 1127 79.6
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1750.3 1128 79.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1748.8 1137 79.9
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1747.6 1128 79.2
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1743.8 1128 79.1
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1742.6 1128 78.7
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1732.2 1132 80.2
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1726.5 1129 79.6
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1724.5 1130 79.4
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1723.8 1141 79.1
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1723.8 1132 79.5
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1721.8 1133 79.3
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1720.7 1125 80.2
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1714.9 1126 78.8
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1710.3 1125 78.8
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1703.7 1179 75.8
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1701.0 1132 78.4
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1699.9 1135 77.4
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1699.5 1130 77.7
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1698.7 1127 77.3
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1695.6 1127 77.1
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1692.2 1102 79.9
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1675.2 1125 77.2
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1669.8 1131 76.8
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1668.7 1128 77.4
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1666.4 1134 77.1
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1666.4 1134 76.7
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1661.7 1125 76.6
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1658.7 1128 76.6
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1653.6 1131 74.5
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1652.5 1129 76.3
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1650.2 1127 76.1
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1645.2 1136 75.1
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1644.8 1125 75.2
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1622.1 1133 73.9
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1621.7 1130 75.1
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1620.9 1135 74.4
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1620.1 1131 74.9
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1616.7 1136 73.8
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1613.2 1126 75.1
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1612.4 1128 74.4
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1611.7 1138 73.2
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1610.5 1148 74.0
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1610.5 1148 74.0
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1610.5 1135 74.7
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1604.0 1127 73.5
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1596.6 1140 72.9
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1595.9 1010 82.7
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1590.5 1127 73.0
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1590.5 1027 79.6
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1586.6 1138 72.1
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1585.9 1132 73.2
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1138 72.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1575.5 1138 72.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1570.4 1130 71.6
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1568.5 1130 71.7
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1567.4 1098 73.5
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1566.2 1130 72.0
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1564.3 1128 72.0
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1558.5 1071 75.6
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1558.1 1131 71.3
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1557.0 1130 70.9
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1556.2 1134 70.5
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1556.2 1131 71.4
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1555.8 1131 71.2
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1553.9 1131 71.1
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1551.2 1131 71.4
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1545.0 1128 71.1
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1545.0 1078 73.7
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1538.5 1130 70.0
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1538.5 1032 75.9
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1537.3 1130 70.0
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1536.9 1129 69.6
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1524.2 1129 69.2
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1520.8 1129 69.0
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1517.7 921 84.5
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1463.4 926 81.1
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1451.8 1126 68.3
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1450.3 1126 68.8
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1419.8 1143 66.5
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1410.2 1092 68.9
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1385.9 1118 64.6
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1360.5 1105 64.2
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1345.1 891 76.5
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1337.4 1089 62.7
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1317.0 883 76.7
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1235.3 823 79.3
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1143.6 926 65.2
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1114.8 797 75.3
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1092.0 1106 52.4
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1076.2 1099 50.9
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 8.1e-304 1047.3 669 79.7
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 2.6e-302 1042.3 1073 49.3
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 2.4e-295 1019.2 1065 50.7
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.3e-293 1013.4 760 68.2
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.4e-247 860.5 603 74.5
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 8.5e-245 851.3 933 52.9
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.0e-226 791.2 1091 42.3
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.3e-216 757.7 636 62.6
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 7.6e-169 599.0 366 79.8
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.4e-161 573.5 422 74.2
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 6.1e-142 509.6 437 66.8
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 2.0e-124 451.4 354 65.5
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 7.8e-97 359.8 313 64.2
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.5e-95 355.5 317 62.1
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.1e-93 349.4 1209 28.0
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.9e-87 328.6 1174 28.2
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.2e-85 320.5 353 59.2
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.9e-83 314.7 364 48.4
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 8.7e-72 276.6 326 49.7
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 3.3e-63 248.1 319 49.5
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 1.0e-35 156.8 100 81.0
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.1e-34 153.3 140 66.4
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.6e-33 149.4 110 76.4
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 3.7e-30 138.3 641 23.7
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 2.9e-27 128.6 86 76.7
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 8.5e-27 127.1 69 82.6
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 2.5e-26 125.6 86 75.6
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 2.5e-26 125.6 68 82.4
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 5.7e-15 87.8 80 70.0
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 5.7e-07 61.2 75 46.7
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 3.7e-06 58.5 45 68.9


User provided reference genes

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