Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 4.0e-246 854.4 441 100.0
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 2.3e-225 785.4 413 97.1
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 7.3e-224 780.4 441 92.1
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 9.5e-224 780.0 440 91.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.7e-220 768.1 441 90.7
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 3.0e-209 731.9 442 85.5
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.8e-207 725.3 442 85.1
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 6.2e-207 724.2 443 84.9
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 8.1e-207 723.8 441 84.8
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.0e-206 721.5 443 84.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 6.8e-206 720.7 445 84.9
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.2e-205 719.9 441 84.4
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.5e-205 719.5 443 84.2
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.5e-205 719.5 441 85.3
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 2.0e-205 719.2 443 84.7
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.6e-205 718.8 442 84.6
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 5.8e-205 717.6 443 84.9
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 7.6e-205 717.2 441 84.6
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 9.9e-205 716.8 442 84.8
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 9.9e-205 716.8 449 84.4
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.3e-204 716.5 443 83.5
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.2e-204 715.7 441 83.7
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.1e-203 713.4 441 84.6
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.4e-203 713.0 444 83.1
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.2e-203 711.4 441 84.4
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 5.4e-203 711.1 442 83.7
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 5.4e-203 711.1 420 86.4
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 7.1e-203 710.7 440 83.6
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.2e-202 709.9 447 83.4
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.1e-202 709.1 440 82.7
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.1e-202 709.1 444 83.3
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 6.0e-202 707.6 439 82.0
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.7e-201 706.1 440 83.9
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 5.1e-201 704.5 440 82.7
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 5.1e-201 704.5 441 83.0
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.6e-201 704.1 444 82.4
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 8.7e-201 703.7 440 83.9
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.1e-200 703.4 440 83.6
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.9e-200 702.6 443 82.8
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 5.6e-200 701.0 439 81.5
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 5.6e-200 701.0 439 81.5
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 7.3e-200 700.7 443 82.6
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.2e-199 699.9 441 82.8
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.6e-199 699.5 441 83.2
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.6e-199 699.5 438 82.2
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 2.1e-199 699.1 439 83.1
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 8.1e-199 697.2 440 81.1
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.1e-198 696.8 443 81.3
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.1e-198 696.8 439 82.5
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.4e-198 696.4 441 83.0
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.0e-198 694.9 442 81.7
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.3e-198 694.5 439 82.2
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.2e-197 693.3 443 81.0
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 4.4e-197 691.4 442 81.9
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 5.8e-197 691.0 439 81.3
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.7e-196 689.5 443 81.7
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.8e-196 688.3 439 81.3
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 6.4e-196 687.6 440 81.4
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.1e-195 686.8 440 81.6
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.4e-195 686.4 442 80.5
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.9e-195 686.0 440 81.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.9e-195 686.0 441 81.0
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 4.2e-195 684.9 444 80.9
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 4.2e-195 684.9 446 81.2
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 9.3e-195 683.7 437 79.9
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 4.6e-194 681.4 443 79.9
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 6.0e-194 681.0 445 80.2
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 6.0e-194 681.0 442 81.2
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 3.0e-193 678.7 444 80.6
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 3.0e-193 678.7 442 80.1
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 5.1e-193 677.9 440 80.7
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.1e-192 676.8 438 80.1
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-192 676.4 442 80.5
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.5e-192 676.4 441 79.8
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.5e-192 675.6 443 79.9
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 3.3e-192 675.2 441 79.8
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.3e-192 674.9 440 80.2
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 4.3e-192 674.9 439 78.8
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 9.6e-192 673.7 439 80.2
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.3e-191 673.3 443 80.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.6e-191 672.9 403 84.1
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.6e-191 672.9 442 80.1
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-191 672.5 440 80.0
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.1e-191 672.5 440 80.0
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.1e-191 672.5 403 84.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 8.1e-191 670.6 439 80.2
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.1e-190 670.2 441 79.1
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 4.0e-190 668.3 444 77.9
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 6.9e-190 667.5 443 77.9
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.2e-189 666.8 441 80.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.5e-189 666.4 408 84.1
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 4.5e-189 664.8 439 77.7
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 9.9e-189 663.7 439 79.5
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.3e-188 663.3 443 79.0
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 4.9e-188 661.4 382 87.7
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 6.4e-188 661.0 442 79.0
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 6.4e-188 661.0 442 79.0
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.2e-186 656.8 440 79.3
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-186 656.0 440 79.3
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 3.0e-185 652.1 408 82.1
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 3.0e-185 652.1 440 78.0
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 3.0e-185 652.1 440 78.0
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 3.0e-185 652.1 408 82.1
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 5.6e-184 647.9 398 81.2
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.6e-183 646.4 448 77.7
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.6e-181 639.0 483 71.4
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 5.8e-181 637.9 444 77.0
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.3e-180 636.7 433 75.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 2.9e-180 635.6 487 69.4
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.9e-179 632.9 425 75.5
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.2e-179 632.1 391 83.9
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 3.2e-179 632.1 397 81.6
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 4.2e-179 631.7 397 80.6
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 5.5e-179 631.3 382 83.2
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.1e-178 629.4 439 74.5
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.7e-178 629.0 421 77.9
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 6.7e-177 624.4 395 79.5
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.5e-176 622.5 380 84.7
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.3e-172 610.1 440 74.3
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 4.2e-171 605.1 440 74.1
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.7e-164 583.2 444 71.6
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 9.4e-163 577.4 381 80.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 9.1e-158 560.8 393 76.8
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.4e-153 547.0 377 71.4
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 4.8e-151 538.5 376 71.5
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.5e-149 533.5 361 78.7
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 3.5e-149 532.3 380 68.7
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 7.7e-149 531.2 307 89.3
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 2.7e-146 522.7 366 69.4
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 3.0e-145 519.2 391 66.0
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 8.8e-145 517.7 395 67.1
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-144 517.3 395 67.1
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-143 513.5 440 62.3
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 8.2e-143 511.1 389 66.3
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.4e-142 509.6 381 65.9
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 5.3e-142 508.4 377 66.3
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 2.0e-141 506.5 361 72.0
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 6.5e-140 501.5 364 66.5
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 4.8e-135 485.3 394 60.9
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 8.3e-135 484.6 361 67.0
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 6.5e-132 474.9 359 65.2
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 6.5e-132 474.9 317 78.2
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.2e-130 470.7 393 60.1
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.0e-113 414.5 365 60.5
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-98 364.0 361 55.7
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 6.6e-92 342.0 302 60.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.5e-83 314.3 214 74.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 5.4e-70 269.2 186 78.0
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.6e-69 266.2 328 45.1
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.5e-59 234.6 198 61.1
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-59 234.6 139 87.1
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.8e-58 230.3 126 86.5
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.9e-54 217.6 154 70.8
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.7e-40 169.1 160 55.6
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 2.1e-37 161.0 119 68.1
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 4.4e-35 153.3 111 75.7
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 3.5e-32 143.7 81 88.9
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.5e-30 138.3 82 86.6
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.5e-27 128.3 112 57.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.8e-26 123.2 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 9.4e-22 109.0 120 49.2
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 3.7e-18 97.1 51 84.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 7.2e-14 82.8 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 4.5e-08 63.5 35 85.7


User provided reference genes

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