Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009441 Carpinus fangiana HOM05D006411 ORTHO05D007563 8.1e-149 530.4 273 100.0
Haze_12492 Corylus avellana HOM05D006411 ORTHO05D007563 4.5e-123 444.9 234 97.4
QL03p049668 Quercus lobata HOM05D006411 ORTHO05D007563 3.3e-102 375.6 244 79.9
Prupe.1G216800 Prunus persica HOM05D006411 ORTHO05D007563 3.6e-96 355.5 238 72.7
Duzib132G0393 Durio zibethinus HOM05D006411 ORTHO05D007563 1.5e-94 350.1 235 71.9
Atru.chr12.1401 Acer truncatum HOM05D006411 ORTHO05D007563 4.4e-94 348.6 234 73.1
TWI18G1006 Tripterygium wilfordii HOM05D006411 ORTHO05D007563 7.5e-94 347.8 235 73.2
Dinv09212 Davidia involucrata HOM05D006411 ORTHO05D007563 9.1e-92 340.9 228 71.9
TAR371G0942 Trochodendron aralioides HOM05D006411 ORTHO05D007563 9.1e-92 340.9 236 71.6
MD16G1129800 Malus domestica HOM05D006411 ORTHO05D007563 5.9e-91 338.2 236 70.3
MD13G1129600 Malus domestica HOM05D006411 ORTHO05D007563 1.7e-90 336.7 237 70.0
GSVIVG01004943001 Vitis vinifera HOM05D006411 ORTHO05D007563 3.8e-90 335.5 235 68.1
Actinidia09598 Actinidia chinensis HOM05D006411 ORTHO05D007563 5.0e-90 335.1 232 70.7
FvH4_4g22791 Fragaria vesca HOM05D006411 ORTHO05D007563 6.5e-90 334.7 230 68.7
RcHm_v2.0_Chr4g0429021 Rosa chinensis HOM05D006411 ORTHO05D007563 6.5e-90 334.7 230 70.4
FAN17G2521 Fragaria x ananassa HOM05D006411 ORTHO05D007563 1.9e-89 333.2 230 68.3
FAN12G0338 Fragaria x ananassa HOM05D002780 ORTHO05D003254 7.2e-89 331.3 233 67.4
Gohir.A01G141100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 4.7e-88 328.6 234 69.7
Manes.09G187200 Manihot esculenta HOM05D006411 ORTHO05D007563 1.4e-87 327.0 237 67.5
Gorai.002G163700 Gossypium raimondii HOM05D006411 ORTHO05D007563 8.8e-87 324.3 234 68.8
Thecc.02G193900 Theobroma cacao HOM05D006411 ORTHO05D007563 2.0e-86 323.2 206 74.3
CSS0035608 Camellia sinensis var. sinensis HOM05D006411 ORTHO05D007563 3.4e-86 322.4 238 68.1
Sabra03G0118900 Salix brachista HOM05D006411 ORTHO05D007563 5.7e-86 321.6 239 64.9
Oeu044509.2 Olea europaea HOM05D006411 ORTHO05D007563 1.7e-85 320.1 233 64.8
CsaV3_6G007790 Cucumis sativus L. HOM05D006411 ORTHO05D007563 2.2e-85 319.7 231 67.5
MSTRG.461 Avicennia marina HOM05D006411 ORTHO05D007563 3.1e-84 315.8 233 64.8
Ciclev10005785m.g Citrus clementina HOM05D006411 ORTHO05D007563 2.0e-83 313.2 232 65.1
Sed0009782 Sechium edule HOM05D006411 ORTHO05D007563 7.7e-83 311.2 231 67.5
Nn1g07843 Nelumbo nucifera HOM05D006411 ORTHO05D007563 4.2e-81 305.4 244 61.5
CANSAT01G2250 Cannabis sativa HOM05D006411 ORTHO05D007563 6.1e-80 301.6 244 64.3
RhsimUnG0101400 Rhododendron simsii HOM05D006411 ORTHO05D007563 6.1e-80 301.6 215 67.4
CiPaw.05G102200 Carya illinoinensis HOM05D006411 ORTHO05D007563 1.4e-79 300.4 232 67.2
Migut.K01066 Erythranthe guttata HOM05D006411 ORTHO05D007563 1.8e-79 300.1 232 62.5
Solyc12g016210.2 Solanum lycopersicum HOM05D006411 ORTHO05D007563 6.8e-79 298.1 215 65.1
Sopen12g008000 Solanum pennellii HOM05D006411 ORTHO05D007563 6.8e-79 298.1 215 65.1
CAN.G529.4 Capsicum annuum HOM05D006411 ORTHO05D007563 1.7e-77 293.5 233 62.2
Lsat_1_v5_gn_2_17720 Lactuca sativa HOM05D006411 ORTHO05D007563 1.7e-77 293.5 233 59.2
SalBow2G2156 Salvia bowleyana HOM05D006411 ORTHO05D007563 6.3e-77 291.6 242 58.3
SalBow7G1895 Salvia bowleyana HOM05D006411 ORTHO05D007563 8.3e-77 291.2 244 57.8
Nn3g20757 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.4e-76 290.4 220 65.9
Nitab4.5_0003020g0130 Nicotiana tabacum HOM05D006411 ORTHO05D007563 1.2e-75 287.3 238 61.3
Aqoxy5G03164 Aquilegia oxysepala HOM05D006411 ORTHO05D007563 2.0e-75 286.6 211 67.3
Sc11g0000150 Simmondsia chinensis HOM05D006411 ORTHO05D007563 2.7e-75 286.2 191 72.8
Ah.03g135590 Amaranthus hybridus HOM05D006411 ORTHO05D007563 1.0e-74 284.3 217 65.4
Lj3g0004314 Lotus japonicus HOM05D006411 ORTHO05D007563 1.7e-74 283.5 225 60.9
AUR62031618 Chenopodium quinoa HOM05D006411 ORTHO05D007563 2.9e-74 282.7 225 62.2
Nitab4.5_0002671g0040 Nicotiana tabacum HOM05D006411 ORTHO05D007563 2.9e-74 282.7 239 60.7
Glyma.11G109300 Glycine max HOM05D006411 ORTHO05D007563 8.6e-74 281.2 225 60.0
EL10Ac6g13598 Beta vulgaris HOM05D006411 ORTHO05D007563 3.3e-73 279.3 251 56.6
Gohir.D01G132100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 3.3e-73 279.3 182 74.2
HanXRQChr17g0559141 Helianthus annuus HOM05D006411 ORTHO05D007563 4.3e-73 278.9 233 56.7
SGA_v2.0_scaffold80G25942 Striga asiatica HOM05D006411 ORTHO05D007563 7.3e-73 278.1 234 57.7
Cc11_g15120 Coffea canephora HOM05D006411 ORTHO05D007563 2.8e-72 276.2 247 56.7
TPR.G28023 Trifolium pratense HOM05D006411 ORTHO05D007563 6.1e-72 275.0 228 60.1
PGR119G0335 Punica granatum HOM05D006411 ORTHO05D007563 2.3e-71 273.1 230 61.3
VMungo1127G0609 Vigna mungo HOM05D006411 ORTHO05D007563 3.1e-71 272.7 233 58.4
Actinidia34001 Actinidia chinensis HOM05D006411 ORTHO05D007563 5.2e-71 271.9 180 72.2
THA.LOC104808624 Tarenaya hassleriana HOM05D006411 ORTHO05D007563 5.2e-71 271.9 235 55.3
Aa31LG8G9800 Aethionema arabicum HOM05D006411 ORTHO05D007563 6.8e-71 271.6 236 57.2
Ca_18949_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 1.2e-70 270.8 262 53.1
Ca_29765_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 1.2e-70 270.8 262 53.1
Hund06130 Selenicereus undatus HOM05D006411 ORTHO05D007563 1.2e-70 270.8 261 55.2
BcaB06g26470 Brassica carinata HOM05D006411 ORTHO05D007563 2.0e-70 270.0 231 59.7
AL3G37910 Arabidopsis lyrata HOM05D006411 ORTHO05D007563 4.4e-70 268.9 228 59.6
Zm00001eb222220 Zea mays HOM05D006411 ORTHO05D007563 4.4e-70 268.9 229 58.1
C07p14190 Brassica napus HOM05D006411 ORTHO05D007563 9.8e-70 267.7 227 59.9
Sp3g20930 Schrenkiella parvula HOM05D006411 ORTHO05D007563 1.7e-69 266.9 231 58.4
BolC7t41915H Brassica oleracea HOM05D006411 ORTHO05D007563 2.9e-69 266.2 227 59.9
Thhalv10021467m.g Eutrema salsugineum HOM05D006411 ORTHO05D007563 2.9e-69 266.2 230 58.7
Os10g0466100 Oryza sativa ssp. japonica HOM05D006411 ORTHO05D007563 8.3e-69 264.6 231 56.7
ATR0751G011 Amborella trichopoda HOM05D006411 ORTHO05D006707 1.1e-68 264.2 184 64.7
Psat7g169880 Pisum sativum HOM05D006411 ORTHO05D007563 1.4e-68 263.8 215 60.9
BraA07t28715Z Brassica rapa HOM05D006411 ORTHO05D007563 1.9e-68 263.5 239 59.4
SHI04127 Sapria himalayana HOM05D006411 ORTHO05D007563 1.9e-68 263.5 238 55.0
AT3G23255 Arabidopsis thaliana HOM05D006411 ORTHO05D007563 3.2e-68 262.7 234 57.3
PSO349G0017 Papaver somniferum HOM05D006411 ORTHO05D007563 4.1e-68 262.3 274 51.1
PSO765G0094 Papaver somniferum HOM05D006411 ORTHO05D007563 9.2e-68 261.2 275 52.0
A07p09200 Brassica napus HOM05D006411 ORTHO05D007563 1.6e-67 260.4 233 60.5
Carub.0003s2350 Capsella rubella HOM05D006411 ORTHO05D007563 8.6e-66 254.6 228 58.3
ECA238G0094 Erigeron canadensis HOM05D006411 ORTHO05D007563 1.1e-65 254.2 232 53.4
vmacro10313 Vaccinium macrocarpon HOM05D006411 ORTHO05D007563 8.3e-61 238.0 171 67.3
MELO3C022353.2 Cucumis melo HOM05D006411 ORTHO05D007563 6.0e-59 231.9 196 60.7
HPP92_007040 Vanilla planifolia HOM05D006411 ORTHO05D007563 6.0e-59 231.9 218 51.8
CARHR099210 Cardamine hirsuta HOM05D006411 ORTHO05D007563 1.0e-58 231.1 204 58.3
SEGI_29411 Sequoiadendron giganteum HOM05D006411 ORTHO05D007563 1.0e-58 231.1 239 49.0
ClCG06G001760 Citrullus lanatus HOM05D006411 ORTHO05D007563 6.6e-58 228.4 179 63.1
Phvul.011G018400 Phaseolus vulgaris HOM05D006411 ORTHO05D007563 2.1e-56 223.4 161 66.5
Carub.0137s0001 Capsella rubella HOM05D006411 ORTHO05D007563 6.2e-56 221.9 171 64.9
Potri.003G163500 Populus trichocarpa HOM05D006411 ORTHO05D007563 6.2e-56 221.9 152 67.8
Lalb_Chr19g0140051 Lupinus albus HOM05D006411 ORTHO05D007563 1.4e-55 220.7 235 50.2
arahy.Tifrunner.gnm1.ann1.ZM7ZD1 Arachis hypogaea HOM05D006411 ORTHO05D007563 2.2e-53 213.4 214 52.8
COL.COLO4_21790 Corchorus olitorius HOM05D006411 ORTHO05D007563 2.9e-53 213.0 233 52.4
Nn3g17917 Nelumbo nucifera HOM05D006411 ORTHO05D007563 6.4e-53 211.8 191 56.0
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 2.4e-52 209.9 203 55.7
Nn2g15361 Nelumbo nucifera HOM05D006411 ORTHO05D007563 9.2e-52 208.0 172 58.1
Medtr4g078190 Medicago truncatula HOM05D006411 ORTHO05D007563 2.7e-51 206.5 134 70.1
Pp3c2_21820 Physcomitrium patens HOM05D006411 ORTHO05D007563 2.3e-50 203.4 229 45.0
AUR62010749 Chenopodium quinoa HOM05D006411 ORTHO05D007563 3.2e-44 183.0 155 59.4
AagrBONN_evm.TU.Sc2ySwM_344.2329 Anthoceros agrestis HOM05D014047 ORTHO05D007563 6.6e-42 175.3 201 46.3
AUR62020519 Chenopodium quinoa HOM05D006411 ORTHO05D007563 2.1e-40 170.2 143 60.8
Lj5g0007299 Lotus japonicus HOM05D006411 ORTHO05D007563 3.8e-37 159.5 142 54.9
FvH4_4g07260 Fragaria vesca HOM05D006411 ORTHO05D007563 6.4e-37 158.7 93 75.3
Mapoly0164s0017 Marchantia polymorpha HOM05D006411 ORTHO05D007563 1.1e-36 157.9 169 46.7
CBR_g41204 Chara braunii HOM05D006411 ORTHO05D007563 2.1e-35 153.7 183 43.7
SHI32270 Sapria himalayana HOM05D006411 ORTHO05D007563 4.8e-24 115.9 126 48.4
Dinv15386 Davidia involucrata HOM05D006411 ORTHO05D007563 3.4e-22 109.8 60 78.3
Nn7g35834 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.0e-21 108.2 73 64.4
AUR62015683 Chenopodium quinoa HOM05D006411 ORTHO05D007563 9.3e-20 101.7 69 68.1
Nn7g35833 Nelumbo nucifera HOM05D006411 ORTHO05D007563 4.6e-19 99.4 64 76.6
SMO119G0262 Selaginella moellendorffii HOM05D006411 ORTHO05D007563 6.0e-19 99.0 137 37.2
Nn2g15434 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.4e-15 87.8 179 35.2
SGA_v2.0_scaffold360G49865 Striga asiatica HOM05D020805 ORTHO05D007563 3.2e-12 76.6 80 47.5
MCO06G175 Micromonas commoda HOM05D006411 ORTHO05D007563 5.5e-12 75.9 179 30.7
Peaxi162Scf00217g00911 Petunia axillaris HOM05D006411 ORTHO05D007563 6.7e-10 68.9 152 30.9
Glyma.12G016051 Glycine max HOM05D006411 ORTHO05D007563 1.5e-09 67.8 82 46.3
MBI05_g34743_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 9.7e-09 65.1 62 50.0
MBI02_g46060_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 1.3e-08 64.7 43 62.8
SalBow3G2205 Salvia bowleyana HOM05D006411 ORTHO05D007563 3.7e-08 63.2 78 44.9
MBI04_g21533_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 6.3e-08 62.4 42 61.9
PRCOL_00001528 Prasinoderma coloniale HOM05D006411 ORTHO05D007563 6.3e-08 62.4 143 32.2
CAN.G1161.15 Capsicum annuum HOM05D000064 ORTHO05D007563 4.1e-07 59.7 41 58.5
AagrBONN_evm.TU.Sc2ySwM_344.2366 Anthoceros agrestis HOM05D006411 ORTHO05D007563 5.9e-06 55.8 69 40.6


User provided reference genes

Program Settings