Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 7.5e-79 297.0 135 100.0
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 8.3e-78 293.5 135 98.5
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 2.5e-74 282.0 135 93.3
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 8.8e-72 273.5 135 88.1
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.7e-70 269.2 135 86.7
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.2e-70 268.9 135 85.2
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 8.3e-70 266.9 134 86.6
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 7.0e-69 263.8 135 86.7
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 9.2e-69 263.5 135 82.2
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.6e-68 262.7 135 85.9
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 7.7e-68 260.4 147 78.9
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.7e-67 259.2 147 78.9
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 5.0e-67 257.7 135 83.0
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 6.6e-67 257.3 135 82.2
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 8.6e-67 256.9 135 83.0
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 8.6e-67 256.9 135 84.4
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.1e-66 256.5 148 76.4
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.5e-66 256.1 150 77.3
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 5.6e-66 254.2 135 83.7
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 5.6e-66 254.2 135 85.2
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 7.3e-66 253.8 135 81.5
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.3e-66 253.8 152 75.0
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 1.6e-65 252.7 135 81.5
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.8e-65 251.9 153 73.9
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 2.3e-64 248.8 135 80.7
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 3.0e-64 248.4 123 87.8
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.0e-64 248.4 153 73.9
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 4.0e-64 248.1 145 75.2
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-63 246.5 135 78.5
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.2e-63 246.5 146 75.3
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 2.6e-63 245.4 132 82.6
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 3.4e-63 245.0 135 78.5
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 5.7e-63 244.2 130 82.3
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 9.8e-63 243.4 135 78.5
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.3e-62 243.0 135 79.3
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.3e-62 243.0 148 73.6
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 2.2e-62 242.3 145 73.1
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 2.9e-62 241.9 135 78.5
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 3.7e-62 241.5 135 77.0
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 4.9e-62 241.1 135 77.8
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 8.3e-62 240.4 135 76.3
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 8.3e-62 240.4 135 79.3
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.4e-61 239.6 133 79.7
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 1.8e-61 239.2 150 72.0
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 2.4e-61 238.8 148 70.9
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 2.4e-61 238.8 133 75.9
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 3.2e-61 238.4 136 79.4
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 3.2e-61 238.4 153 69.9
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 4.1e-61 238.0 150 70.0
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 9.2e-61 236.9 133 79.7
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 75.6
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 75.6
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 2.0e-60 235.7 135 75.6
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 2.0e-60 235.7 159 65.4
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 2.7e-60 235.3 123 82.9
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 3.5e-60 235.0 135 75.6
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 3.5e-60 235.0 135 75.6
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 4.6e-60 234.6 148 70.9
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 5.9e-60 234.2 135 75.6
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.9e-60 234.2 159 66.7
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 7.8e-60 233.8 135 74.8
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.8e-60 233.8 137 75.2
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.8e-60 233.8 137 75.2
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 7.8e-60 233.8 137 75.2
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.0e-59 233.4 136 75.7
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 1.7e-59 232.6 136 75.7
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 1.7e-59 232.6 136 75.7
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 74.8
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 3.0e-59 231.9 135 74.8
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 5.0e-59 231.1 135 74.1
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 6.6e-59 230.7 153 68.0
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 74.1
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 8.6e-59 230.3 153 68.0
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 1.5e-58 229.6 141 70.2
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 1.9e-58 229.2 149 67.8
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 2.5e-58 228.8 144 70.8
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 3.3e-58 228.4 154 66.9
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 3.3e-58 228.4 154 66.9
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 4.3e-58 228.0 158 65.2
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.3e-58 228.0 133 76.7
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 5.6e-58 227.6 147 64.6
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 7.3e-58 227.3 135 74.1
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 7.3e-58 227.3 133 76.7
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 9.5e-58 226.9 122 80.3
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 1.2e-57 226.5 133 74.4
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.6e-57 226.1 135 74.8
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.1e-57 225.7 147 64.6
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.8e-57 225.3 150 66.0
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 3.6e-57 224.9 138 72.5
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 4.7e-57 224.6 145 67.6
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 6.2e-57 224.2 169 61.5
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 6.2e-57 224.2 123 78.0
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 2.3e-56 222.2 130 73.8
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.1e-56 221.9 130 73.1
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.5e-55 219.5 133 70.7
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 2.0e-55 219.2 123 74.0
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 3.4e-55 218.4 123 74.8
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 4.4e-55 218.0 130 76.9
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 7.5e-55 217.2 142 69.7
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 9.8e-55 216.9 129 76.0
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.2e-54 215.7 126 73.0
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 4.9e-54 214.5 130 72.3
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 8.3e-54 213.8 130 73.1
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 6.6e-51 204.1 150 62.0
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 3.3e-50 201.8 154 61.0
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 2.1e-49 199.1 143 60.1
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 8.9e-48 193.7 123 69.1
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.5e-47 193.0 159 57.2
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 7.5e-47 190.7 113 71.7
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 7.5e-47 190.7 113 71.7
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 2.8e-41 172.2 105 70.5
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.8e-40 169.5 173 47.4
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.2e-38 162.5 117 57.3
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 3.2e-37 158.7 124 56.5
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 7.8e-36 154.1 87 80.5
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.0e-35 153.7 136 50.7
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 2.3e-35 152.5 126 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 5.2e-32 141.4 147 45.6
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 1.5e-31 139.8 72 81.9
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 7.8e-28 127.5 59 91.5
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 4.3e-26 121.7 58 86.2
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.8e-19 99.8 114 47.4
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 5.6e-18 94.7 81 56.8
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-17 92.8 54 70.4
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 6.2e-17 91.3 105 46.7
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 8.1e-17 90.9 80 55.0
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 8.1e-17 90.9 80 55.0
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.8e-16 89.7 74 52.7
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.4e-13 79.3 75 52.0
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 3.2e-13 79.0 112 36.6
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 2.7e-12 75.9 111 38.7
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.0e-11 73.9 135 34.8
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.1e-10 70.5 102 37.3
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 3.3e-10 68.9 40 67.5
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 5.6e-10 68.2 49 55.1
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.7e-09 65.5 53 50.9
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 8.2e-09 64.3 53 52.8
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.1e-08 63.9 53 50.9
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.1e-08 62.4 52 50.0
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.1e-08 62.4 52 50.0
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 1.3e-06 57.0 49 55.1


User provided reference genes

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