Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 1.4e-201 706.1 347 100.0
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 4.7e-194 681.0 347 97.1
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 9.6e-163 577.0 359 80.5
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 1.5e-160 569.7 353 81.3
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 2.5e-158 562.4 352 79.8
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.5e-158 562.4 352 79.8
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 2.5e-158 562.4 363 78.8
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 3.2e-158 562.0 352 80.1
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 5.5e-158 561.2 353 79.6
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 4.6e-157 558.1 357 78.2
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 1.3e-156 556.6 357 79.3
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 1.9e-155 552.7 361 78.1
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 7.4e-155 550.8 363 78.5
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 7.4e-155 550.8 359 78.0
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 1.3e-154 550.1 353 77.9
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 1.1e-153 547.0 351 78.1
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 3.1e-153 545.4 355 77.2
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 5.3e-153 544.7 358 77.4
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.5e-152 543.1 351 76.9
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 2.0e-152 542.7 357 78.2
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 7.6e-152 540.8 350 77.7
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.0e-151 540.4 349 77.4
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 1.7e-151 539.7 351 76.9
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 6.5e-151 537.7 348 76.4
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.9e-150 536.2 363 76.9
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.9e-150 536.2 363 76.9
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 1.9e-150 536.2 350 77.1
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.5e-150 535.8 350 76.0
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 2.5e-150 535.8 350 76.6
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 4.2e-150 535.0 362 77.1
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 7.1e-150 534.3 350 76.0
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 2.1e-149 532.7 377 75.1
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 2.1e-149 532.7 377 75.1
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 2.1e-149 532.7 352 75.9
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 2.7e-149 532.3 356 76.7
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 3.5e-149 531.9 362 73.2
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 6.0e-149 531.2 365 73.7
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 1.8e-148 529.6 361 73.4
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 1.8e-148 529.6 364 75.3
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 3.0e-148 528.9 365 73.7
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 3.0e-148 528.9 360 76.4
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 3.9e-148 528.5 356 74.4
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 3.9e-148 528.5 354 76.6
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 5.1e-148 528.1 355 73.8
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 5.1e-148 528.1 363 73.0
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 5.1e-148 528.1 356 76.1
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 6.7e-148 527.7 363 72.7
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 8.7e-148 527.3 366 74.9
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.1e-147 526.9 351 77.5
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 1.5e-147 526.6 358 72.9
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 1.9e-147 526.2 357 75.6
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 5.7e-147 524.6 364 72.5
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 9.7e-147 523.9 364 72.3
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 1.6e-146 523.1 358 73.5
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 4.8e-146 521.5 357 73.9
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 6.3e-146 521.2 359 71.9
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 6.3e-146 521.2 364 72.0
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 6.3e-146 521.2 364 72.0
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 6.3e-146 521.2 357 76.2
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 1.1e-145 520.4 362 75.7
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 1.4e-145 520.0 353 74.2
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 4.1e-145 518.5 350 74.6
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 7.7e-144 514.2 349 73.9
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 7.7e-144 514.2 362 72.7
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.0e-143 513.8 347 75.5
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 2.9e-143 512.3 367 72.8
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 9.4e-142 507.3 356 72.5
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.7e-141 505.8 361 71.7
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 3.6e-141 505.4 328 78.7
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 1.0e-140 503.8 349 72.8
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 1.8e-140 503.1 358 70.9
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 2.3e-140 502.7 376 69.9
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 3.0e-140 502.3 363 70.8
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 5.1e-140 501.5 358 70.7
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 8.8e-140 500.7 348 71.8
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 2.5e-139 499.2 358 70.4
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 5.7e-139 498.0 345 74.2
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 7.4e-139 497.7 349 72.5
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 8.2e-138 494.2 347 70.0
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 8.2e-138 494.2 436 62.4
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 6.9e-137 491.1 324 76.5
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 1.2e-136 490.3 362 69.9
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 1.5e-136 490.0 356 70.2
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.9e-135 485.7 314 76.4
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 2.9e-135 485.7 344 70.1
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 2.9e-135 485.7 365 68.2
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 3.2e-134 482.3 352 68.5
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 9.4e-134 480.7 350 69.7
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 2.7e-133 479.2 358 69.0
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 3.6e-133 478.8 349 69.6
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 4.7e-133 478.4 344 69.2
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 2.6e-131 472.6 327 74.9
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 1.7e-130 469.9 319 75.9
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 1.8e-129 466.5 357 67.5
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 2.0e-128 463.0 282 83.7
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 4.5e-128 461.8 347 66.0
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 1.7e-127 459.9 355 65.9
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 7.2e-126 454.5 353 67.1
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 3.0e-124 449.1 347 66.9
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 5.7e-123 444.9 347 63.7
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 8.2e-122 441.0 362 65.2
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 8.2e-122 441.0 365 64.9
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 4.5e-120 435.3 331 67.4
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 6.5e-119 431.4 347 64.6
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.5e-118 430.3 361 62.9
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 4.0e-116 422.2 287 76.7
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 8.8e-116 421.0 352 61.4
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 1.8e-113 413.3 296 67.9
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 1.3e-111 407.1 281 76.5
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.9e-110 403.3 315 62.9
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 9.4e-110 401.0 317 65.9
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 3.6e-109 399.1 351 60.7
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 3.0e-108 396.0 338 60.4
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.7e-106 390.2 348 58.0
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.6e-104 383.6 347 59.4
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 1.0e-100 370.9 194 90.7
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 4.0e-100 369.0 345 55.7
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 9.8e-99 364.4 228 78.1
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.7e-98 363.6 352 54.5
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 7.0e-97 358.2 194 86.1
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.2e-96 357.5 299 61.2
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 4.5e-96 355.5 295 59.3
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 7.8e-96 354.8 290 63.1
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 3.3e-94 349.4 194 86.1
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 6.1e-93 345.1 296 54.7
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 3.6e-69 266.2 153 82.4
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 1.2e-64 251.1 210 63.3
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.3e-62 243.0 126 88.9
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 1.1e-49 201.4 203 52.7
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 4.6e-48 196.1 100 91.0
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 3.3e-46 189.9 182 57.1
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 4.0e-44 183.0 91 90.1
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 1.5e-43 181.0 137 72.3
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 5.8e-35 152.5 234 45.3
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 4.2e-33 146.4 155 53.5
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 4.3e-30 136.3 153 49.0
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 1.3e-29 134.8 103 69.9
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 9.0e-28 128.6 73 78.1
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 9.0e-28 128.6 83 77.1
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 1.5e-27 127.9 73 78.1
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.0e-15 87.0 120 41.7
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 5.7e-14 82.8 41 90.2
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 7.2e-09 65.9 71 56.3


User provided reference genes

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