Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 3.9e-265 917.5 453 100.0
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 4.4e-248 860.9 471 91.1
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 1.3e-228 796.2 446 86.1
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 5.7e-224 780.8 450 84.9
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 1.8e-222 775.8 457 83.2
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 1.3e-220 769.6 431 86.1
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 1.7e-220 769.2 447 83.7
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 2.5e-219 765.4 449 82.4
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.6e-218 762.7 446 82.7
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 8.0e-218 760.4 447 82.1
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 1.8e-217 759.2 446 82.3
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 3.0e-217 758.4 446 83.2
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 4.0e-217 758.1 446 82.5
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 4.0e-217 758.1 449 81.5
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 6.8e-217 757.3 453 81.2
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 6.8e-217 757.3 447 82.3
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 8.8e-217 756.9 447 82.3
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 2.6e-216 755.4 449 82.6
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 2.8e-215 751.9 456 80.5
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.4e-214 749.6 446 83.0
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 2.4e-214 748.8 435 82.3
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.2e-213 746.5 445 80.7
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.3e-212 743.0 449 79.3
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 2.9e-212 741.9 453 81.5
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 5.0e-212 741.1 447 81.0
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 8.6e-212 740.3 445 80.2
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 2.5e-211 738.8 448 81.0
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 9.5e-211 736.9 447 81.2
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 9.5e-211 736.9 445 80.0
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.1e-210 735.7 439 81.5
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.1e-210 735.7 439 81.1
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 2.8e-210 735.3 438 80.8
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 8.0e-210 733.8 413 85.0
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.4e-209 733.0 439 81.3
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 1.4e-209 733.0 475 78.1
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 1.8e-209 732.6 453 78.8
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 2.3e-209 732.3 439 81.3
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 2.3e-209 732.3 455 78.5
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 3.0e-209 731.9 447 78.5
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 5.2e-209 731.1 447 79.6
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 8.9e-209 730.3 445 79.6
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 2.0e-208 729.2 445 78.9
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 2.6e-208 728.8 445 79.8
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 2.6e-208 728.8 438 79.9
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 4.4e-208 728.0 449 78.8
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 7.5e-208 727.2 438 79.0
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 2.2e-207 725.7 438 80.1
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 4.1e-206 721.5 438 79.9
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 4.1e-206 721.5 447 79.6
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 7.0e-206 720.7 447 77.2
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 9.2e-206 720.3 481 73.2
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 1.0e-204 716.8 430 81.2
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.7e-204 716.1 438 78.8
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 3.9e-204 714.9 438 79.0
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 5.0e-204 714.5 438 77.4
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.5e-203 713.0 449 79.1
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 1.9e-203 712.6 434 79.3
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 9.5e-203 710.3 436 78.0
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.4e-201 706.4 434 77.9
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 6.8e-201 704.1 455 73.2
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 6.8e-201 704.1 446 75.1
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 1.2e-200 703.4 466 73.6
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 1.2e-200 703.4 447 74.9
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 2.6e-200 702.2 446 73.8
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.3e-199 699.9 455 72.5
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 3.7e-199 698.4 450 74.9
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 1.9e-198 696.0 446 75.1
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 5.4e-198 694.5 446 77.6
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 9.2e-198 693.7 450 74.9
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 3.5e-197 691.8 448 74.1
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 4.6e-197 691.4 448 75.9
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 7.8e-197 690.6 455 71.9
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 2.3e-196 689.1 455 71.4
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 2.3e-196 689.1 451 73.2
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 3.9e-196 688.3 475 69.5
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 5.0e-196 688.0 455 71.6
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 5.0e-196 688.0 430 75.3
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 1.1e-195 686.8 448 73.0
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 1.1e-195 686.8 428 75.7
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.9e-195 686.0 467 70.4
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 3.6e-194 681.8 455 71.2
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.1e-193 680.2 458 71.8
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 1.8e-193 679.5 484 72.9
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 3.1e-193 678.7 428 74.5
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 5.2e-193 677.9 455 71.2
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 5.2e-193 677.9 476 68.3
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 1.2e-192 676.8 485 67.4
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 3.4e-192 675.2 497 70.8
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 5.4e-190 667.9 409 80.4
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 2.7e-189 665.6 412 78.6
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 4.6e-189 664.8 456 73.2
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 1.7e-188 662.9 464 71.6
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 1.2e-186 656.8 447 72.9
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 2.1e-186 656.0 479 67.4
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 1.1e-185 653.7 428 72.0
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 1.9e-182 642.9 406 77.8
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 2.4e-177 625.9 447 70.5
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.5e-176 623.2 371 81.9
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 2.9e-175 619.0 412 70.9
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 6.4e-175 617.8 461 68.5
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 2.4e-174 615.9 385 75.1
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 9.3e-174 614.0 453 68.7
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 1.4e-169 600.1 457 64.3
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 1.6e-162 576.6 428 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 2.4e-158 562.8 431 61.9
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 5.5e-158 561.6 322 83.5
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 1.3e-154 550.4 430 58.6
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 2.0e-152 543.1 431 59.4
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.2e-149 533.9 426 60.3
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 1.0e-135 487.6 275 82.5
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 2.2e-135 486.5 455 57.8
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 6.7e-124 448.4 447 56.6
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 3.5e-112 409.5 434 44.7
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 1.5e-107 394.0 439 46.5
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 9.8e-107 391.3 370 59.5
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 3.6e-101 372.9 315 62.9
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 7.5e-91 338.6 182 87.9
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 7.0e-89 332.0 478 39.3
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 2.7e-64 250.4 337 45.4
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 1.1e-62 245.0 182 70.9
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 2.4e-57 227.3 373 40.8
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 1.0e-55 221.9 108 93.5
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 4.6e-48 196.4 123 79.7
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 2.5e-46 190.7 390 35.1
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 3.3e-46 190.3 124 78.2
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 8.7e-39 165.6 137 64.2
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 2.3e-31 141.0 100 67.0
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 8.2e-29 132.5 88 63.6
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 5.3e-28 129.8 135 50.4
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 1.0e-23 115.5 104 60.6
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 2.3e-23 114.4 83 67.5
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 1.5e-22 111.7 67 71.6
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 4.3e-22 110.2 208 32.7
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 3.1e-20 104.0 71 67.6
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 2.0e-19 101.3 69 69.6
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 1.7e-18 98.2 69 68.1
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 3.2e-17 94.0 101 52.5
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 9.7e-14 82.4 56 73.2


User provided reference genes

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