Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 2.1e-112 409.1 213 100.0
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 3.4e-94 348.6 228 82.9
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 3.1e-55 219.2 210 59.5
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 3.1e-55 219.2 218 59.2
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 4.1e-39 165.6 204 52.5
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 9.1e-39 164.5 214 49.5
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 1.6e-38 163.7 210 49.5
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 3.5e-38 162.5 207 44.9
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 2.9e-37 159.5 225 43.6
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 6.5e-37 158.3 216 43.1
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 2.5e-36 156.4 213 42.7
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 4.0e-34 149.1 219 48.4
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 1.7e-32 143.7 216 44.4
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 2.2e-32 143.3 218 45.4
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.7e-32 142.5 216 43.1
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.4e-31 140.6 214 45.8
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.8e-31 140.2 206 44.7
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 4.1e-31 139.0 176 47.7
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 7.0e-31 138.3 215 42.8
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 7.0e-31 138.3 191 49.2
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.2e-30 137.5 215 42.3
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 1.6e-30 137.1 201 43.8
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 2.0e-30 136.7 220 41.8
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 4.5e-30 135.6 201 44.8
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 7.7e-30 134.8 201 43.3
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 7.7e-30 134.8 227 39.2
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 2.3e-29 133.3 224 40.2
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 3.8e-29 132.5 210 41.9
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 6.6e-29 131.7 207 42.0
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 8.6e-29 131.3 222 40.1
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 1.9e-28 130.2 207 40.6
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.9e-28 130.2 213 45.5
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 3.3e-28 129.4 212 43.4
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.2e-27 127.5 223 39.0
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.2e-27 127.5 199 42.7
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.6e-27 127.1 200 44.5
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.8e-27 126.3 175 43.4
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 2.8e-27 126.3 205 40.5
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 3.6e-27 125.9 175 46.3
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 4.7e-27 125.6 200 44.0
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 4.7e-27 125.6 212 39.2
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 8.0e-27 124.8 201 42.3
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 8.0e-27 124.8 200 43.0
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 1.0e-26 124.4 221 39.4
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 1.8e-26 123.6 217 41.0
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 2.3e-26 123.2 217 39.2
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 5.2e-26 122.1 222 35.6
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.2e-25 120.9 222 36.5
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 7.5e-25 118.2 201 41.3
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 7.5e-25 118.2 212 41.5
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 9.8e-25 117.9 205 39.5
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 1.3e-24 117.5 207 36.7
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 1.1e-23 114.4 193 42.0
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 1.4e-23 114.0 212 40.1
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 7.0e-23 111.7 197 40.1
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 1.2e-22 110.9 213 36.2
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 1.6e-22 110.5 163 41.7
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 2.0e-22 110.2 209 38.8
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 2.0e-22 110.2 197 39.1
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 3.5e-22 109.4 185 41.6
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 4.6e-22 109.0 163 42.3
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 4.6e-22 109.0 163 42.3
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 4.6e-22 109.0 169 41.4
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 5.9e-22 108.6 163 43.6
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 5.9e-22 108.6 195 38.5
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 7.8e-22 108.2 210 37.6
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 1.0e-21 107.8 162 41.4
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 1.3e-21 107.5 163 42.3
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 1.3e-21 107.5 163 43.6
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 1.7e-21 107.1 163 41.1
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 2.3e-21 106.7 153 43.1
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 2.3e-21 106.7 163 41.7
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 2.3e-21 106.7 214 36.0
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 6.6e-21 105.1 176 38.1
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 1.1e-20 104.4 170 40.6
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.1e-20 104.4 211 37.9
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 1.9e-20 103.6 163 39.3
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 2.5e-20 103.2 163 39.9
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 4.3e-20 102.4 163 38.7
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 4.3e-20 102.4 165 41.8
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 4.3e-20 102.4 199 33.7
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 5.6e-20 102.1 162 39.5
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 1.2e-19 100.9 163 38.0
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.6e-19 100.5 200 37.0
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.6e-19 100.5 118 50.8
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.6e-19 100.5 118 50.8
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 3.6e-19 99.4 107 48.6
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 4.7e-19 99.0 163 37.4
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 4.7e-19 99.0 113 49.6
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 1.0e-18 97.8 154 39.0
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 1.0e-18 97.8 154 44.8
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 4.0e-18 95.9 142 45.8
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.2e-18 95.5 122 45.9
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 8.9e-18 94.7 128 50.0
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 1.5e-17 94.0 204 33.8
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 2.6e-17 93.2 209 35.9
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 5.8e-17 92.0 163 38.0
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 7.5e-17 91.7 163 36.2
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 7.5e-17 91.7 205 33.7
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 9.8e-17 91.3 131 45.8
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.3e-16 90.9 120 45.0
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 2.9e-16 89.7 191 35.1
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 3.7e-16 89.4 155 38.1
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 4.9e-16 89.0 210 30.5
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 4.1e-15 85.9 167 35.9
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 5.0e-13 79.0 162 40.1
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 6.6e-13 78.6 208 31.2
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 2.5e-12 76.6 205 30.2
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 3.1e-10 69.7 167 30.5
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 3.1e-10 69.7 139 36.0
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.2e-09 67.8 162 29.6
Glyma.01G130700 Glycine max HOM05D006962 ORTHO05D008696 2.0e-09 67.0 124 40.3
CANSAT64G2900 Cannabis sativa HOM05D006962 ORTHO05D008696 1.6e-06 57.4 135 39.3


User provided reference genes

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