Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 5.6e-110 401.0 206 100.0
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 7.6e-91 337.4 209 85.6
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 3.8e-90 335.1 209 86.1
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 1.0e-82 310.5 260 68.8
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 1.7e-82 309.7 208 80.8
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 7.1e-81 304.3 159 96.9
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 7.1e-81 304.3 208 79.8
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 2.7e-80 302.4 209 78.0
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 7.9e-80 300.8 212 77.4
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 7.9e-80 300.8 212 77.4
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 7.9e-80 300.8 208 78.4
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 1.5e-78 296.6 209 78.0
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 1.9e-78 296.2 207 77.8
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 3.7e-77 292.0 219 74.4
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 2.4e-76 289.3 224 73.7
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 3.1e-76 288.9 211 75.4
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 3.1e-76 288.9 211 75.4
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 2.0e-75 286.2 213 76.1
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 1.7e-74 283.1 212 74.1
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 2.2e-74 282.7 214 74.8
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.2e-74 282.7 209 75.6
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 3.8e-74 282.0 208 74.0
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.8e-74 282.0 209 73.7
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 8.5e-74 280.8 216 74.5
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 3.2e-73 278.9 214 74.3
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 2.7e-72 275.8 225 69.8
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 3.6e-72 275.4 206 68.9
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 3.0e-71 272.3 218 72.0
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.0e-71 272.3 212 73.1
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 3.9e-71 271.9 206 69.4
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.9e-70 269.6 206 70.4
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.3e-70 268.9 232 67.2
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 4.3e-70 268.5 208 70.7
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 4.3e-70 268.5 208 70.7
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 5.7e-70 268.1 206 69.9
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 9.7e-70 267.3 208 69.7
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 9.7e-70 267.3 160 84.4
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 2.8e-69 265.8 202 69.3
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 2.8e-69 265.8 206 69.4
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 4.8e-69 265.0 231 66.2
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 6.3e-69 264.6 173 81.5
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 8.2e-69 264.2 177 79.1
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 1.1e-68 263.8 223 69.5
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 5.3e-68 261.5 210 70.0
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 5.3e-68 261.5 203 70.4
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 6.9e-68 261.2 214 67.8
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 4.5e-67 258.5 227 64.8
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 1.0e-66 257.3 207 70.0
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.0e-66 257.3 214 69.6
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 1.7e-66 256.5 217 67.3
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 2.9e-66 255.8 213 66.7
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 5.0e-66 255.0 220 67.7
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 5.0e-66 255.0 219 66.7
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 5.0e-66 255.0 214 66.4
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 6.5e-66 254.6 216 68.1
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.1e-65 253.8 207 69.1
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.4e-65 253.4 216 66.7
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 1.4e-65 253.4 190 74.2
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 2.5e-65 252.7 204 71.1
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 5.5e-65 251.5 211 69.2
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 5.5e-65 251.5 220 67.3
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 9.4e-65 250.8 222 66.7
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 9.4e-65 250.8 228 65.4
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 1.2e-64 250.4 252 61.1
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 2.1e-64 249.6 197 72.1
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 2.7e-64 249.2 205 66.8
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 2.7e-64 249.2 208 67.8
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 3.6e-64 248.8 173 77.5
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 6.1e-64 248.1 210 68.1
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 7.9e-64 247.7 214 64.0
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 1.4e-63 246.9 200 68.0
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 2.3e-63 246.1 191 72.3
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 2.3e-63 246.1 223 62.3
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.0e-63 245.7 198 71.2
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 6.7e-63 244.6 209 64.6
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 8.8e-63 244.2 184 71.7
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 4.4e-62 241.9 216 61.6
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 7.4e-62 241.1 204 64.2
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 3.7e-61 238.8 277 54.9
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.8e-61 238.4 241 58.9
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.1e-60 237.3 207 64.7
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 2.4e-60 236.1 210 64.3
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 2.4e-60 236.1 187 66.3
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 3.1e-60 235.7 210 63.8
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 4.1e-60 235.3 196 66.3
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 5.3e-60 235.0 205 65.9
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 6.9e-60 234.6 216 62.5
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 4.5e-59 231.9 210 64.3
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 1.0e-58 230.7 150 80.7
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 1.3e-58 230.3 211 60.2
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 1.7e-58 229.9 208 63.0
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 2.9e-58 229.2 211 60.7
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 5.0e-58 228.4 210 63.3
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 6.5e-58 228.0 207 64.3
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 6.5e-58 228.0 209 60.8
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 6.5e-58 228.0 206 64.1
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 8.5e-58 227.6 208 63.0
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 1.1e-57 227.3 210 62.9
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 1.1e-57 227.3 210 62.9
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.1e-57 227.3 130 86.9
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.4e-57 226.9 210 63.3
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 1.4e-57 226.9 211 59.2
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 2.5e-57 226.1 210 62.9
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 2.5e-57 226.1 211 60.2
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 2.5e-57 226.1 211 60.7
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 9.4e-57 224.2 219 62.6
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 6.1e-56 221.5 286 50.0
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 5.2e-55 218.4 190 65.8
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 1.3e-53 213.8 120 89.2
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.3e-53 213.8 225 58.2
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 1.7e-53 213.4 186 66.7
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 4.8e-53 211.8 176 65.9
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 8.2e-53 211.1 158 68.4
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.2e-51 207.2 149 71.8
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.5e-51 205.3 142 74.6
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 1.0e-50 204.1 159 67.9
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 2.9e-50 202.6 207 60.4
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 1.1e-49 200.7 142 73.9
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 1.6e-48 196.8 189 61.4
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 4.7e-48 195.3 193 56.5
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 4.7e-48 195.3 169 59.8
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 6.1e-48 194.9 170 64.7
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 4.0e-47 192.2 206 57.3
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 5.2e-47 191.8 191 59.2
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 5.2e-47 191.8 212 51.4
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 4.4e-46 188.7 164 66.5
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 1.8e-44 183.3 133 69.2
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 2.2e-42 176.4 233 48.1
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 2.2e-42 176.4 165 61.8
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 2.9e-42 176.0 193 55.4
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 5.0e-42 175.3 133 66.9
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 8.5e-42 174.5 116 77.6
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 8.5e-42 174.5 161 61.5
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.1e-41 174.1 165 60.0
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 3.2e-41 172.6 206 51.5
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 3.2e-41 172.6 137 67.9
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 5.5e-41 171.8 148 64.9
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.7e-40 168.7 163 61.3
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.4e-39 167.2 163 58.9
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 1.8e-39 166.8 157 64.3
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 1.8e-39 166.8 130 68.5
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 4.4e-38 162.2 137 63.5
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.4e-36 157.1 133 58.6
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 1.0e-26 124.4 210 41.9
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 2.5e-25 119.8 132 47.7
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.5e-22 110.5 98 66.3
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 4.9e-21 105.5 62 87.1
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 3.3e-17 92.8 160 38.1
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 9.5e-17 91.3 88 55.7
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 3.1e-15 86.3 116 40.5
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 2.7e-11 73.2 51 68.6
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 1.9e-09 67.0 100 49.0
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 9.5e-09 64.7 58 69.0
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 4.7e-08 62.4 39 71.8


User provided reference genes

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