Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 3.8e-50 201.1 92 100.0
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 3.8e-50 201.1 92 100.0
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 2.1e-48 195.3 92 95.7
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 2.8e-45 184.9 92 91.3
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 2.4e-44 181.8 89 91.0
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 9.1e-44 179.9 92 87.0
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 1.5e-43 179.1 84 96.4
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.0e-43 178.7 92 89.1
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 4.5e-43 177.6 92 85.9
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 5.9e-43 177.2 84 94.0
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 5.9e-43 177.2 89 88.8
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 7.7e-43 176.8 92 87.0
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 1.3e-42 176.0 92 85.9
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 1.3e-42 176.0 88 88.6
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 1.3e-42 176.0 92 88.0
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 1.7e-42 175.6 92 87.0
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 1.7e-42 175.6 92 87.0
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 2.2e-42 175.3 92 85.9
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 2.9e-42 174.9 88 87.5
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 2.9e-42 174.9 85 90.6
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 2.9e-42 174.9 92 85.9
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 2.9e-42 174.9 90 87.8
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 3.8e-42 174.5 89 88.8
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 3.8e-42 174.5 84 92.9
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 3.8e-42 174.5 84 92.9
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 5.0e-42 174.1 84 92.9
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 5.0e-42 174.1 92 84.8
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 8.5e-42 173.3 94 84.0
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 2.5e-41 171.8 92 82.6
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 5.5e-41 170.6 89 84.3
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.5e-41 170.6 89 84.3
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.5e-41 170.6 89 84.3
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 5.5e-41 170.6 89 84.3
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 5.5e-41 170.6 92 83.7
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 7.2e-41 170.2 92 81.5
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 9.4e-41 169.9 84 89.3
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 9.4e-41 169.9 84 89.3
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 9.4e-41 169.9 84 89.3
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 9.4e-41 169.9 84 89.3
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 1.2e-40 169.5 89 87.6
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 1.2e-40 169.5 84 89.3
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.6e-40 169.1 92 82.6
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 1.6e-40 169.1 92 83.7
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 1.6e-40 169.1 83 90.4
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 2.7e-40 168.3 88 86.4
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 2.7e-40 168.3 84 88.1
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.6e-40 167.9 92 82.6
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 3.6e-40 167.9 84 91.7
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 6.1e-40 167.2 87 83.9
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 7.9e-40 166.8 92 81.5
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 1.0e-39 166.4 90 82.2
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 5.2e-39 164.1 84 85.7
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 8.8e-39 163.3 85 85.9
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 1.1e-38 162.9 91 80.2
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 1.1e-38 162.9 86 84.9
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 1.1e-38 162.9 87 81.6
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 1.5e-38 162.5 84 84.5
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 1.5e-38 162.5 85 83.5
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 2.0e-38 162.2 85 83.5
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 2.6e-38 161.8 92 79.3
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 2.6e-38 161.8 85 85.9
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 2.6e-38 161.8 85 85.9
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 3.3e-38 161.4 83 84.3
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 3.3e-38 161.4 84 83.3
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 3.3e-38 161.4 84 84.5
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 4.4e-38 161.0 84 88.1
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 5.7e-38 160.6 84 86.9
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 7.4e-38 160.2 84 84.5
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 7.4e-38 160.2 87 80.5
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 7.4e-38 160.2 84 84.5
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 9.7e-38 159.8 91 78.0
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 1.3e-37 159.5 83 81.9
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 2.2e-37 158.7 84 82.1
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 8.2e-37 156.8 83 83.1
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 8.2e-37 156.8 84 82.1
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 8.2e-37 156.8 84 82.1
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 8.2e-37 156.8 84 82.1
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 1.1e-36 156.4 83 81.9
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 1.8e-36 155.6 89 77.5
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 2.4e-36 155.2 91 75.8
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 2.4e-36 155.2 90 76.7
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 3.1e-36 154.8 87 78.2
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 4.1e-36 154.5 84 83.3
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 5.3e-36 154.1 83 79.5
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 5.3e-36 154.1 90 75.6
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 5.3e-36 154.1 90 75.6
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 9.1e-36 153.3 82 81.7
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 9.1e-36 153.3 84 81.0
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 9.1e-36 153.3 84 81.0
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 9.1e-36 153.3 84 81.0
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 9.1e-36 153.3 84 81.0
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.2e-35 152.9 82 82.9
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 1.6e-35 152.5 92 75.0
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 2.0e-35 152.1 84 79.8
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 2.0e-35 152.1 84 79.8
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 2.6e-35 151.8 84 79.8
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 2.6e-35 151.8 84 79.8
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 2.6e-35 151.8 84 79.8
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 2.6e-35 151.8 84 79.8
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 2.6e-35 151.8 80 81.2
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 7.7e-35 150.2 76 86.8
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 2.2e-34 148.7 84 78.6
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 4.7e-32 141.0 90 68.9
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 8.0e-32 140.2 83 78.3
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 4.0e-31 137.9 84 75.0
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 6.7e-31 137.1 87 70.1
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 8.8e-31 136.7 84 73.8
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 8.8e-31 136.7 90 67.8
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 2.0e-30 135.6 83 72.3
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 2.6e-30 135.2 84 73.8
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 3.3e-30 134.8 90 68.9
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 1.7e-29 132.5 87 69.0
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 6.3e-29 130.6 85 69.4
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 1.8e-28 129.0 85 69.4
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 3.1e-28 128.3 69 75.4
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 2.7e-27 125.2 87 63.2
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.4e-22 107.8 70 70.0
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.4e-22 107.8 70 70.0
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 1.1e-20 103.2 84 50.0
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 1.2e-19 99.8 82 48.8
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 4.5e-19 97.8 52 76.9
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 5.0e-18 94.4 78 51.3
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 3.0e-15 85.1 42 81.0
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 8.8e-15 83.6 78 44.9
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 3.4e-14 81.6 80 42.5
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 3.5e-11 71.6 41 85.4
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 2.9e-10 68.6 88 47.7
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 1.4e-07 59.7 61 49.2
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 1.2e-06 56.6 36 69.4
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 2.0e-06 55.8 36 66.7


User provided reference genes

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