Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 3.2e-72 275.0 140 100.0
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 4.3e-69 264.6 143 96.5
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 3.9e-54 214.9 143 77.6
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 7.6e-50 200.7 143 70.6
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 3.8e-49 198.4 143 69.9
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 3.8e-49 198.4 143 69.9
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 9.2e-48 193.7 139 71.2
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 6.0e-47 191.0 139 67.6
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 1.0e-46 190.3 142 66.2
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 3.0e-46 188.7 139 68.3
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 3.9e-46 188.3 142 65.5
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 3.9e-46 188.3 142 65.5
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 3.3e-45 185.3 142 64.8
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 1.2e-44 183.3 138 68.8
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 3.6e-44 181.8 142 62.7
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 4.7e-44 181.4 130 72.3
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 6.2e-44 181.0 129 72.1
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 8.9e-43 177.2 129 69.0
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 1.2e-42 176.8 130 70.8
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 3.4e-42 175.3 140 66.4
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 7.6e-42 174.1 131 69.5
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 9.9e-42 173.7 137 65.0
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 3.8e-41 171.8 131 66.4
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 6.4e-41 171.0 133 66.9
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 8.4e-41 170.6 129 68.2
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 8.4e-41 170.6 122 71.3
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 9.3e-40 167.2 133 65.4
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 4.6e-39 164.9 137 62.0
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.0e-38 163.7 139 63.3
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 1.3e-38 163.3 127 65.4
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.3e-38 163.3 137 63.5
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 2.3e-38 162.5 137 60.6
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 5.1e-38 161.4 132 62.9
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 6.6e-38 161.0 137 59.9
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 8.7e-38 160.6 140 62.1
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.1e-37 160.2 139 61.2
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 1.9e-37 159.5 126 69.8
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 3.3e-37 158.7 160 58.8
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 4.3e-37 158.3 131 62.6
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 7.3e-37 157.5 130 67.7
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 9.6e-37 157.1 129 61.2
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 4.8e-36 154.8 126 64.3
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 4.8e-36 154.8 131 65.6
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 6.2e-36 154.5 131 64.9
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 6.2e-36 154.5 131 64.9
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 1.1e-35 153.7 130 64.6
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 1.1e-35 153.7 130 64.6
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 1.1e-35 153.7 116 65.5
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 1.4e-35 153.3 125 64.8
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 2.4e-35 152.5 134 61.2
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 3.1e-35 152.1 132 65.2
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 3.1e-35 152.1 132 65.2
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 4.0e-35 151.8 129 64.3
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 1.5e-34 149.8 132 62.1
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 2.6e-34 149.1 130 62.3
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 2.6e-34 149.1 128 62.5
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 7.6e-34 147.5 123 63.4
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 2.2e-33 146.0 133 57.9
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 3.8e-33 145.2 128 57.8
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 3.8e-33 145.2 118 61.9
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 3.8e-33 145.2 127 63.8
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 3.8e-33 145.2 133 57.9
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 4.9e-33 144.8 134 58.2
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 8.4e-33 144.1 127 61.4
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 8.4e-33 144.1 131 58.8
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 1.1e-32 143.7 120 65.0
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 1.9e-32 142.9 115 61.7
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.4e-32 142.5 127 55.9
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 2.4e-32 142.5 126 61.9
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 3.2e-32 142.1 135 57.0
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 4.2e-32 141.7 137 54.0
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 5.4e-32 141.4 139 57.6
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 9.3e-32 140.6 130 56.9
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 1.6e-31 139.8 129 58.1
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 2.7e-31 139.0 123 57.7
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 3.5e-31 138.7 132 59.1
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 4.6e-31 138.3 131 58.0
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 1.0e-30 137.1 131 57.3
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 1.0e-30 137.1 116 62.1
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 1.3e-30 136.7 124 60.5
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 1.8e-30 136.3 137 54.0
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.3e-30 136.0 121 58.7
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 2.3e-30 136.0 124 58.1
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 6.7e-30 134.4 130 58.5
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 2.5e-29 132.5 126 57.1
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 3.3e-29 132.1 109 64.2
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 4.3e-29 131.7 140 53.6
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 8.1e-28 127.5 104 62.5
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 8.1e-28 127.5 109 61.5
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 1.8e-27 126.3 109 58.7
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 3.1e-27 125.6 107 61.7
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 9.0e-27 124.0 122 51.6
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 3.4e-26 122.1 130 49.2
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 1.4e-24 116.7 115 54.8
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 7.9e-23 110.9 105 57.1
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 8.7e-22 107.5 134 44.8
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 9.0e-19 97.4 119 45.4
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 3.1e-11 72.4 88 42.0
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 2.0e-10 69.7 46 63.0
Prupe.2G047600 Prunus persica HOM05D002489 ORTHO05D002653 2.7e-07 59.3 113 32.7
MD07G1042300 Malus domestica HOM05D002489 ORTHO05D002653 3.6e-07 58.9 113 32.7
HanXRQChr03g0091651 Helianthus annuus HOM05D002489 ORTHO05D002653 4.6e-07 58.5 121 32.2
RcHm_v2.0_Chr1g0328761 Rosa chinensis HOM05D002489 ORTHO05D002653 4.6e-07 58.5 113 32.7
Sed0020453 Sechium edule HOM05D002489 ORTHO05D002653 6.1e-07 58.2 120 32.5
GSVIVG01036581001 Vitis vinifera HOM05D002489 ORTHO05D002653 6.1e-07 58.2 88 36.4
Ciclev10002081m.g Citrus clementina HOM05D002489 ORTHO05D002653 7.9e-07 57.8 96 34.4
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 7.9e-07 57.8 89 33.7
LjContig00430g0026017 Lotus japonicus HOM05D002489 ORTHO05D002653 1.0e-06 57.4 120 30.8
Psat5g224160 Pisum sativum HOM05D002489 ORTHO05D002653 1.0e-06 57.4 93 34.4
CANSAT56G2669 Cannabis sativa HOM05D002489 ORTHO05D002653 1.3e-06 57.0 96 34.4
Lalb_Chr03g0032591 Lupinus albus HOM05D002489 ORTHO05D002653 1.3e-06 57.0 96 34.4
Sp6g35820 Schrenkiella parvula HOM05D002489 ORTHO05D002653 1.3e-06 57.0 88 37.5
SGA_v2.0_scaffold29G12136 Striga asiatica HOM05D002489 ORTHO05D002653 1.3e-06 57.0 108 34.3
ATR0709G046 Amborella trichopoda HOM05D002489 ORTHO05D002653 1.8e-06 56.6 75 41.3
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 1.8e-06 56.6 87 35.6
FvH4_7g04210 Fragaria vesca HOM05D002489 ORTHO05D002653 1.8e-06 56.6 105 33.3
FAN03G2991 Fragaria x ananassa HOM05D002489 ORTHO05D002653 1.8e-06 56.6 105 33.3
FAN06G4066 Fragaria x ananassa HOM05D002489 ORTHO05D002653 1.8e-06 56.6 105 33.3
FAN10G0477 Fragaria x ananassa HOM05D002489 ORTHO05D002653 1.8e-06 56.6 105 33.3
Manes.04G155300 Manihot esculenta HOM05D002489 ORTHO05D002653 1.8e-06 56.6 117 29.9
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 1.8e-06 56.6 83 37.3
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 1.8e-06 56.6 83 37.3
AT3G12480 Arabidopsis thaliana HOM05D002489 ORTHO05D002653 2.3e-06 56.2 92 33.7
Carub.0003s1181 Capsella rubella HOM05D002489 ORTHO05D002653 2.3e-06 56.2 92 33.7
CDE07G0320 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 2.3e-06 56.2 87 35.6
Duzib128G0493 Durio zibethinus HOM05D002489 ORTHO05D002653 2.3e-06 56.2 91 35.2
MD02G1273400 Malus domestica HOM05D002489 ORTHO05D002653 2.3e-06 56.2 108 32.4
Medtr3g012030 Medicago truncatula HOM05D002489 ORTHO05D002653 2.3e-06 56.2 114 31.6
Sed0016042 Sechium edule HOM05D002489 ORTHO05D002653 2.3e-06 56.2 91 35.2
Thecc.10G138700 Theobroma cacao HOM05D002489 ORTHO05D002653 2.3e-06 56.2 91 35.2
HPP92_002807 Vanilla planifolia HOM05D007500 ORTHO05D009197 2.3e-06 56.2 76 44.7
ATR0307G117 Amborella trichopoda HOM05D002489 ORTHO05D002653 3.0e-06 55.8 87 35.6
C01p52760 Brassica napus HOM05D002489 ORTHO05D002653 3.0e-06 55.8 73 39.7
BolC1t05213H Brassica oleracea HOM05D002489 ORTHO05D002653 3.0e-06 55.8 73 39.7
ClCG11G013040 Citrullus lanatus HOM05D002489 ORTHO05D002653 3.0e-06 55.8 91 35.2
DCAR_025311 Daucus carota HOM05D002489 ORTHO05D002653 3.0e-06 55.8 91 34.1
FAN01G0190 Fragaria x ananassa HOM05D002489 ORTHO05D002653 3.0e-06 55.8 105 33.3
Potri.001G033200 Populus trichocarpa HOM05D002489 ORTHO05D002653 3.0e-06 55.8 109 31.2
Potri.003G192100 Populus trichocarpa HOM05D002489 ORTHO05D002653 3.0e-06 55.8 91 34.1
vmacro13785 Vaccinium macrocarpon HOM05D002489 ORTHO05D002653 3.0e-06 55.8 116 28.4
Actinidia24486 Actinidia chinensis HOM05D002489 ORTHO05D002653 3.9e-06 55.5 108 32.4
Gohir.A06G173800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 3.9e-06 55.5 95 34.7
Gohir.D06G183800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 3.9e-06 55.5 95 34.7
Gorai.010G215200 Gossypium raimondii HOM05D002489 ORTHO05D002653 3.9e-06 55.5 95 34.7
Lalb_Chr19g0132861 Lupinus albus HOM05D002489 ORTHO05D002653 3.9e-06 55.5 88 35.2
Nitab4.5_0004168g0030 Nicotiana tabacum HOM05D002489 ORTHO05D002653 3.9e-06 55.5 103 33.0
Os11g0544700 Oryza sativa ssp. japonica HOM05D002489 ORTHO05D002653 3.9e-06 55.5 106 32.1
Aa31sc1276G10 Aethionema arabicum HOM05D002489 ORTHO05D002653 5.1e-06 55.1 88 35.2
BcaB04g18680 Brassica carinata HOM05D002489 ORTHO05D002653 5.1e-06 55.1 88 35.2
BcaC09g48244 Brassica carinata HOM05D002489 ORTHO05D002653 5.1e-06 55.1 73 38.4
A03p37630 Brassica napus HOM05D002489 ORTHO05D002653 5.1e-06 55.1 88 35.2
BNapus_Darmor_BZH_scaffold_149p00010 Brassica napus HOM05D002489 ORTHO05D002653 5.1e-06 55.1 73 38.4
C03p45620 Brassica napus HOM05D002489 ORTHO05D002653 5.1e-06 55.1 88 35.2
BolC3t16839H Brassica oleracea HOM05D002489 ORTHO05D002653 5.1e-06 55.1 88 35.2
BraA01t04134Z Brassica rapa HOM05D002489 ORTHO05D002653 5.1e-06 55.1 73 38.4
BraA03t12917Z Brassica rapa HOM05D002489 ORTHO05D002653 5.1e-06 55.1 88 35.2
CARHR086980 Cardamine hirsuta HOM05D002489 ORTHO05D002653 5.1e-06 55.1 121 30.6
DCAR_006595 Daucus carota HOM05D002489 ORTHO05D002653 5.1e-06 55.1 91 34.1
Thhalv10021246m.g Eutrema salsugineum HOM05D002489 ORTHO05D002653 5.1e-06 55.1 125 30.4
Glyma.13G189400 Glycine max HOM05D002489 ORTHO05D002653 5.1e-06 55.1 95 33.7
Phvul.005G014300 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 5.1e-06 55.1 88 35.2
PGR031G2636 Punica granatum HOM05D002489 ORTHO05D002653 5.1e-06 55.1 88 35.2
Sp3g10610 Schrenkiella parvula HOM05D002489 ORTHO05D002653 5.1e-06 55.1 73 38.4
arahy.Tifrunner.gnm1.ann1.L34J1I Arachis hypogaea HOM05D002489 ORTHO05D002653 6.7e-06 54.7 95 33.7
Glyma.06G311400 Glycine max HOM05D002489 ORTHO05D002653 6.7e-06 54.7 88 36.4
Lj3g0021581 Lotus japonicus HOM05D002489 ORTHO05D002653 6.7e-06 54.7 75 37.3
TWI15G0844 Tripterygium wilfordii HOM05D002489 ORTHO05D002653 6.7e-06 54.7 88 35.2
TWI63G0515 Tripterygium wilfordii HOM05D002489 ORTHO05D002653 6.7e-06 54.7 88 35.2
arahy.Tifrunner.gnm1.ann1.CT41QQ Arachis hypogaea HOM05D002489 ORTHO05D002653 8.7e-06 54.3 88 35.2
Carub.0006s0598 Capsella rubella HOM05D002489 ORTHO05D002653 8.7e-06 54.3 125 31.2
Ca_24030_v3 Cicer arietinum L. HOM05D002489 ORTHO05D002653 8.7e-06 54.3 88 35.2
MELO3C011797.2 Cucumis melo HOM05D002489 ORTHO05D002653 8.7e-06 54.3 91 34.1
CsaV3_5G029530 Cucumis sativus L. HOM05D002489 ORTHO05D002653 8.7e-06 54.3 91 34.1
Dinv31993 Davidia involucrata HOM05D002489 ORTHO05D002653 8.7e-06 54.3 106 32.1
Glyma.15G227300 Glycine max HOM05D002489 ORTHO05D002653 8.7e-06 54.3 88 35.2
Medtr8g041420 Medicago truncatula HOM05D002489 ORTHO05D002653 8.7e-06 54.3 88 35.2
Phvul.011G196500 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 8.7e-06 54.3 88 35.2
Psat4g189760 Pisum sativum HOM05D002489 ORTHO05D002653 8.7e-06 54.3 88 35.2
QL04p021817 Quercus lobata HOM05D002489 ORTHO05D002653 8.7e-06 54.3 91 34.1
TPR.G16359 Trifolium pratense HOM05D002489 ORTHO05D002653 8.7e-06 54.3 88 35.2
VMungo1127G1287 Vigna mungo HOM05D002489 ORTHO05D002653 8.7e-06 54.3 88 35.2


User provided reference genes

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