Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 2.8e-108 395.6 243 100.0
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 1.3e-92 343.6 237 85.7
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 4.8e-52 208.8 291 49.5
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 3.5e-42 176.0 296 39.2
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 4.5e-42 175.6 204 52.9
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 5.0e-41 172.2 294 38.4
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 1.1e-40 171.0 153 56.9
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 4.8e-36 155.6 184 46.2
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 1.8e-35 153.7 155 51.0
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 7.0e-35 151.8 172 49.4
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 9.1e-35 151.4 286 35.7
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 9.1e-35 151.4 184 45.1
Sed0017756 Sechium edule HOM05D007857 ORTHO05D009355 1.2e-34 151.0 186 46.2
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 3.5e-34 149.4 299 35.8
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 2.2e-33 146.7 158 51.3
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 2.2e-33 146.7 212 46.2
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 2.2e-33 146.7 212 46.2
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 2.9e-33 146.4 154 50.0
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 2.5e-32 143.3 158 50.6
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 4.2e-32 142.5 281 33.1
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 5.5e-32 142.1 155 47.7
ClCG08G017230 Citrullus lanatus HOM05D007857 ORTHO05D009355 1.6e-31 140.6 187 42.8
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 2.7e-31 139.8 174 44.8
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 3.6e-31 139.4 153 47.7
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 4.7e-31 139.0 280 32.5
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 4.7e-31 139.0 180 43.3
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 6.1e-31 138.7 151 48.3
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 8.0e-31 138.3 154 48.7
MELO3C010736.2 Cucumis melo HOM05D007857 ORTHO05D009355 1.4e-30 137.5 155 46.5
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 1.8e-30 137.1 158 47.5
Glyma.03G186400 Glycine max HOM05D007857 ORTHO05D009355 2.3e-30 136.7 159 47.2
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 5.2e-30 135.6 156 50.6
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 6.8e-30 135.2 157 46.5
Lj4g0021592 Lotus japonicus HOM05D007857 ORTHO05D009355 8.8e-30 134.8 179 41.9
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 8.8e-30 134.8 146 42.5
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 1.2e-29 134.4 159 47.2
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 2.6e-29 133.3 180 40.6
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 3.4e-29 132.9 150 46.0
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 3.4e-29 132.9 184 41.8
Sed0006532 Sechium edule HOM05D007857 ORTHO05D009355 9.8e-29 131.3 155 47.7
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 1.3e-28 131.0 158 46.8
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 2.2e-28 130.2 158 46.2
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 2.8e-28 129.8 146 41.8
VMungo0251G2942 Vigna mungo HOM05D007857 ORTHO05D009355 2.8e-28 129.8 133 48.9
TPR.G17074 Trifolium pratense HOM05D007857 ORTHO05D009355 3.7e-28 129.4 119 57.1
Medtr8g080270 Medicago truncatula HOM05D007857 ORTHO05D009355 8.3e-28 128.3 155 47.7
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 1.8e-27 127.1 159 43.4
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 2.4e-27 126.7 202 37.1
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 2.4e-27 126.7 178 40.4
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 3.1e-27 126.3 202 36.1
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 4.1e-27 125.9 202 36.6
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 5.4e-27 125.6 159 43.4
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 5.4e-27 125.6 291 35.1
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 7.0e-27 125.2 156 44.2
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 9.1e-27 124.8 265 30.9
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 1.2e-26 124.4 266 37.6
MBI11_g31349_MAGBIO Magnolia biondii HOM05D007857 ORTHO05D009355 3.5e-26 122.9 182 38.5
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 2.3e-25 120.2 168 41.1
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 2.3e-25 120.2 162 42.0
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 8.0e-23 111.7 119 48.7
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 1.8e-22 110.5 119 48.7
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 1.8e-22 110.5 119 48.7
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 2.3e-22 110.2 147 39.5
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 2.3e-22 110.2 256 30.1
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 4.0e-22 109.4 177 35.6
PGR119G0189 Punica granatum HOM05D007857 ORTHO05D009355 1.6e-18 97.4 153 38.6
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 2.0e-18 97.1 142 40.1
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 2.7e-18 96.7 102 46.1
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 3.9e-17 92.8 246 32.9
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 3.9e-17 92.8 155 36.8
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 7.3e-16 88.6 260 26.9
Migut.K00709 Erythranthe guttata HOM05D007857 ORTHO05D009355 1.6e-15 87.4 142 37.3
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 3.6e-15 86.3 108 46.3
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 6.1e-15 85.5 247 31.2
Aa31sc48G30 Aethionema arabicum HOM05D010720 ORTHO05D009355 1.0e-14 84.7 262 27.1
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 1.0e-14 84.7 109 43.1
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 4.0e-14 82.8 264 26.9
BcaB05g24293 Brassica carinata HOM05D010720 ORTHO05D009355 8.9e-14 81.6 259 25.9
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 1.5e-13 80.9 261 26.1
BcaC03g14845 Brassica carinata HOM05D010720 ORTHO05D009355 1.5e-13 80.9 259 25.9
BolC2t08453H Brassica oleracea HOM05D010720 ORTHO05D009355 2.0e-13 80.5 259 25.9
C02p23110 Brassica napus HOM05D010720 ORTHO05D009355 5.8e-13 79.0 259 25.9
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 7.5e-13 78.6 252 27.4
ATR0686G174 Amborella trichopoda HOM05D007857 ORTHO05D009355 2.2e-12 77.0 244 25.8
A02p14300 Brassica napus HOM05D010720 ORTHO05D009355 6.4e-12 75.5 259 24.7
BraA02t06491Z Brassica rapa HOM05D010720 ORTHO05D009355 6.4e-12 75.5 259 24.7
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 1.4e-11 74.3 156 31.4
BcaNung05070 Brassica carinata HOM05D010720 ORTHO05D009355 1.4e-11 74.3 257 27.2
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 2.4e-11 73.6 156 30.8
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 2.4e-11 73.6 156 30.8
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 4.1e-11 72.8 206 26.2
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 4.1e-11 72.8 98 37.8
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 7.0e-11 72.0 156 30.8
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 7.0e-11 72.0 156 30.8
Os04g0504700 Oryza sativa ssp. japonica HOM05D007857 ORTHO05D009355 7.0e-11 72.0 104 35.6
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 2.0e-10 70.5 81 43.2
Lsat_1_v5_gn_8_149921 Lactuca sativa HOM05D007857 ORTHO05D009355 3.0e-09 66.6 185 29.2
Sp5g22550 Schrenkiella parvula HOM05D010720 ORTHO05D009355 1.1e-08 64.7 189 32.8
SHI17949 Sapria himalayana HOM05D007857 ORTHO05D009355 2.5e-08 63.5 123 33.3
ECA233G3449 Erigeron canadensis HOM05D007857 ORTHO05D009355 3.6e-07 59.7 126 32.5


User provided reference genes

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