Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1738.4 865 100.0
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1584.7 884 90.4
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1495.3 868 86.1
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1469.9 867 84.9
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1468.8 771 94.7
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1423.7 868 82.0
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1405.6 868 81.5
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1403.3 868 80.2
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1401.7 870 80.9
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1399.0 868 80.8
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1399.0 868 80.4
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1398.3 868 81.0
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1395.9 868 80.3
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1395.2 868 80.4
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1394.8 868 80.0
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1390.9 868 80.4
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1385.9 860 81.7
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1381.7 868 80.5
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1379.0 942 75.6
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1378.6 870 80.2
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1375.5 868 80.1
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1372.5 868 80.0
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1372.5 868 80.0
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1372.1 868 80.5
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1372.1 869 79.7
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1371.3 856 80.8
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1367.4 868 79.4
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1363.2 868 79.0
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1361.7 869 79.2
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1360.9 868 78.5
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1360.1 868 79.4
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1359.4 868 79.1
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1359.0 868 78.6
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1357.4 868 78.1
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1357.4 868 78.9
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1357.0 870 78.6
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1351.7 868 78.5
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1351.3 868 77.5
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1351.3 868 78.2
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1350.9 869 77.8
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1349.7 868 77.5
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1349.7 977 72.7
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1348.6 868 77.5
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1343.2 868 77.9
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1341.6 868 78.1
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1340.9 885 77.3
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 868 77.9
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1340.1 868 78.0
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 868 77.4
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 869 78.0
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 868 78.2
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 874 78.3
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1338.2 930 73.1
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 868 77.2
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1333.5 869 77.7
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1333.5 869 77.2
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1332.8 868 76.7
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1332.8 868 77.2
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1332.8 868 76.3
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1330.9 869 76.6
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1330.9 878 77.0
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 900 75.6
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 875 76.2
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 868 76.8
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 868 77.0
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1325.8 875 76.8
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1325.5 875 76.0
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 869 76.6
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 869 76.6
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 870 77.0
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 937 72.3
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1323.1 941 72.7
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1322.4 875 75.9
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1322.0 868 76.0
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1314.7 868 75.7
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1307.4 873 74.6
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1304.3 868 75.3
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1300.4 868 74.4
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1295.0 845 76.7
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1291.6 868 76.6
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1270.8 852 75.4
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1266.1 853 75.6
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1256.5 791 77.7
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1252.3 897 71.8
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1251.9 872 74.3
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1251.1 793 77.9
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1238.0 865 73.4
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1235.3 793 77.9
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1234.2 803 76.7
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1228.0 794 76.7
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1221.5 872 73.4
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1221.1 869 73.3
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1212.2 818 75.1
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1176.4 869 68.2
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1166.8 703 83.5
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1161.4 888 66.9
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1160.6 758 75.6
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1159.4 853 68.5
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1141.3 865 69.0
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1134.8 874 66.0
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1114.0 727 76.6
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1104.7 869 65.8
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1090.5 884 63.3
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 3.4e-310 1068.1 878 62.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.5e-305 1052.7 869 61.8
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 1.1e-303 1046.6 665 78.5
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 5.7e-281 971.1 872 61.8
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.8e-256 889.0 672 69.9
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 1.5e-236 823.5 572 71.7
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 2.5e-228 796.2 533 75.4
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.7e-216 756.9 424 87.3
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.6e-156 557.0 326 84.0
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 2.1e-126 457.6 297 79.5
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.1e-113 414.5 254 81.5
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.7e-113 414.1 308 66.2
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 2.2e-107 394.4 306 67.3
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.6e-94 351.7 203 85.2
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-92 345.5 394 51.0
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 7.1e-90 336.3 283 62.9
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.9e-71 275.0 284 53.9
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 7.9e-65 253.1 191 68.6
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.7e-54 218.8 139 78.4
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.1e-45 189.5 140 68.6
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.9e-42 178.7 137 70.1
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 1.6e-36 159.1 94 81.9
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 2.9e-35 154.8 139 60.4
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 6.5e-35 153.7 83 84.3
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 3.0e-32 144.8 75 97.3
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 2.7e-28 131.7 102 70.6
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 6.6e-27 127.1 85 69.4
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.3e-24 118.6 75 73.3
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 1.3e-22 112.8 69 79.7
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 2.3e-19 102.1 87 64.4
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 4.7e-17 94.4 68 63.2
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 8.0e-17 93.6 116 53.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.5e-10 72.0 42 85.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 9.5e-10 70.1 50 64.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-07 63.2 41 78.0


User provided reference genes

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