Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009318 Carpinus fangiana HOM05D005632 ORTHO05D006870 4.1e-31 137.5 73 100.0
Haze_12372 Corylus avellana HOM05D005632 ORTHO05D006870 8.0e-27 123.2 65 98.5
Peaxi162Scf00128g00929 Petunia axillaris HOM05D005632 ORTHO05D006870 3.0e-26 121.3 70 88.6
DCAR_031183 Daucus carota HOM05D005632 ORTHO05D006870 3.7e-24 114.4 70 82.9
MBI11_g46744_MAGBIO Magnolia biondii HOM05D005632 ORTHO05D006870 4.9e-24 114.0 68 86.8
vmacro01081 Vaccinium macrocarpon HOM05D005632 ORTHO05D006870 6.3e-24 113.6 70 84.3
MBI08_g36441_MAGBIO Magnolia biondii HOM05D005632 ORTHO05D006870 4.1e-23 110.9 70 80.0
Peaxi162Scf00797g00115 Petunia axillaris HOM05D005632 ORTHO05D006870 9.1e-23 109.8 69 81.2
MSTRG.522 Avicennia marina HOM05D005632 ORTHO05D006870 1.2e-22 109.4 67 83.6
QL03p054693 Quercus lobata HOM05D005632 ORTHO05D006870 1.2e-22 109.4 65 83.1
EL10Ac6g13443 Beta vulgaris HOM05D005632 ORTHO05D006870 2.7e-22 108.2 65 84.6
Hma1.2p1_1340F.1_g276780 Hydrangea macrophylla HOM05D005632 ORTHO05D006870 2.7e-22 108.2 65 84.6
HanXRQChr08g0207511 Helianthus annuus HOM05D005632 ORTHO05D006870 4.5e-22 107.5 68 79.4
AUR62005576 Chenopodium quinoa HOM05D005632 ORTHO05D006870 5.9e-22 107.1 62 87.1
BcaB03g15184 Brassica carinata HOM05D005632 ORTHO05D006870 1.3e-21 105.9 67 82.1
Gohir.A01G155800 Gossypium hirsutum HOM05D005632 ORTHO05D006870 1.7e-21 105.5 65 80.0
Lj4g0009016 Lotus japonicus HOM05D005632 ORTHO05D006870 1.9e-20 102.1 72 73.6
Potri.010G056800 Populus trichocarpa HOM05D005632 ORTHO05D006870 3.3e-20 101.3 59 86.4
Migut.E00242 Erythranthe guttata HOM05D005632 ORTHO05D006870 5.5e-20 100.5 65 76.9
Glyma.08G102500 Glycine max HOM05D005632 ORTHO05D006870 7.2e-20 100.1 70 72.9
CiPaw.05G114600 Carya illinoinensis HOM05D005632 ORTHO05D006870 1.6e-19 99.0 66 80.3
Glyma.05G145700 Glycine max HOM05D005632 ORTHO05D006870 2.1e-19 98.6 69 72.5
Rhsim12G0029700 Rhododendron simsii HOM05D005632 ORTHO05D006870 2.1e-19 98.6 67 79.1
VMungo0251G3265 Vigna mungo HOM05D005632 ORTHO05D006870 1.0e-18 96.3 68 70.6
Dinv10990 Davidia involucrata HOM05D005632 ORTHO05D006870 3.0e-18 94.7 57 84.2
SalBow2G0748 Salvia bowleyana HOM05D005632 ORTHO05D006870 2.0e-17 92.0 48 93.8
Hund06068 Selenicereus undatus HOM05D005632 ORTHO05D006870 2.0e-17 92.0 54 81.5
Lalb_Chr13g0294171 Lupinus albus HOM05D005632 ORTHO05D006870 3.4e-17 91.3 69 71.0
TWI36G0420 Tripterygium wilfordii HOM05D005632 ORTHO05D006870 3.4e-17 91.3 66 68.2
TWI36G0711 Tripterygium wilfordii HOM05D005632 ORTHO05D006870 3.4e-17 91.3 66 68.2
MSTRG.13321 Avicennia marina HOM05D005632 ORTHO05D006870 1.7e-16 89.0 56 78.6
CSS0014265 Camellia sinensis var. sinensis HOM05D005632 ORTHO05D006870 5.0e-13 77.4 50 88.0
Sabra08G0136100 Salix brachista HOM05D005632 ORTHO05D006870 1.2e-11 72.8 70 58.6
Sabra10G0070600 Salix brachista HOM05D002431 ORTHO05D002543 1.6e-11 72.4 63 58.7
AUR62024154 Chenopodium quinoa HOM05D005632 ORTHO05D006870 2.8e-11 71.6 34 94.1
TWI18G1462 Tripterygium wilfordii HOM05D005632 ORTHO05D006870 2.8e-11 71.6 40 82.5
Potri.008G144300 Populus trichocarpa HOM05D002431 ORTHO05D002543 8.0e-11 70.1 67 56.7
Ca_18210_v3 Cicer arietinum L. HOM05D002431 ORTHO05D002543 1.0e-10 69.7 64 54.7
Sopen05g009890 Solanum pennellii HOM05D005632 ORTHO05D006870 1.0e-10 69.7 39 87.2
PGSC0003DMG400017445 Solanum tuberosum HOM05D005632 ORTHO05D006870 1.0e-10 69.7 39 87.2
Duzib248G1043 Durio zibethinus HOM05D005632 ORTHO05D006870 3.1e-10 68.2 34 88.2
Gohir.D01G154266 Gossypium hirsutum HOM05D005632 ORTHO05D006870 3.1e-10 68.2 34 85.3
Gorai.002G191000 Gossypium raimondii HOM05D005632 ORTHO05D006870 3.1e-10 68.2 34 85.3
TAR622G0018 Trochodendron aralioides HOM05D005632 ORTHO05D006870 3.1e-10 68.2 34 88.2
VMungo0251G0662 Vigna mungo HOM05D002431 ORTHO05D002543 4.0e-10 67.8 66 54.5
Sc11g0000640 Simmondsia chinensis HOM05D005632 ORTHO05D006870 5.2e-10 67.4 34 88.2
Atru.chr11.1045 Acer truncatum HOM05D002431 ORTHO05D002543 8.9e-10 66.6 66 53.0
AUR62017841 Chenopodium quinoa HOM05D002431 ORTHO05D002543 8.9e-10 66.6 61 55.7
MD13G1113300 Malus domestica HOM05D005632 ORTHO05D006870 8.9e-10 66.6 34 85.3
Psat7g086280 Pisum sativum HOM05D002431 ORTHO05D002543 8.9e-10 66.6 66 54.5
Sabra08G0109300 Salix brachista HOM05D002431 ORTHO05D002543 8.9e-10 66.6 59 57.6
TAR374G0791 Trochodendron aralioides HOM05D005632 ORTHO05D006870 8.9e-10 66.6 34 85.3
TPR.G34762 Trifolium pratense HOM05D002431 ORTHO05D002543 1.2e-09 66.2 65 53.8
Glyma.08G090800 Glycine max HOM05D002431 ORTHO05D002543 1.5e-09 65.9 65 53.8
Gohir.A05G311200 Gossypium hirsutum HOM05D005632 ORTHO05D006870 1.5e-09 65.9 34 85.3
Thecc.02G274700 Theobroma cacao HOM05D005632 ORTHO05D006870 1.5e-09 65.9 32 90.6
CANSAT01G1127 Cannabis sativa HOM05D005632 ORTHO05D006870 2.0e-09 65.5 31 93.5
CANSAT01G1284 Cannabis sativa HOM05D005632 ORTHO05D006870 2.0e-09 65.5 31 93.5
HanXRQChr08g0207501 Helianthus annuus HOM05D005632 ORTHO05D006870 2.0e-09 65.5 35 82.9
Lsat_1_v5_gn_8_149761 Lactuca sativa HOM05D005632 ORTHO05D006870 2.0e-09 65.5 37 81.1
HanXRQChr12g0385931 Helianthus annuus HOM05D005632 ORTHO05D006870 2.6e-09 65.1 35 85.7
Nn3g16536 Nelumbo nucifera HOM05D005632 ORTHO05D006870 2.6e-09 65.1 31 90.3
Phvul.002G186400 Phaseolus vulgaris HOM05D002431 ORTHO05D002543 3.4e-09 64.7 65 52.3
Atru.chr11.2274 Acer truncatum HOM05D005632 ORTHO05D006870 4.4e-09 64.3 31 90.3
MELO3C010730.2 Cucumis melo HOM05D005632 ORTHO05D006870 4.4e-09 64.3 33 84.8
Potri.010G098000 Populus trichocarpa HOM05D002431 ORTHO05D002543 4.4e-09 64.3 59 55.9
Dinv12783 Davidia involucrata HOM05D002431 ORTHO05D002543 5.8e-09 63.9 61 57.4
Dinv28152 Davidia involucrata HOM05D002431 ORTHO05D002543 7.5e-09 63.5 58 56.9
Actinidia30669 Actinidia chinensis HOM05D005632 ORTHO05D006870 9.8e-09 63.2 31 90.3
MD16G1112600 Malus domestica HOM05D005632 ORTHO05D006870 9.8e-09 63.2 30 90.0
Prupe.1G232800 Prunus persica HOM05D005632 ORTHO05D006870 9.8e-09 63.2 30 90.0
CAN.G282.81 Capsicum annuum HOM05D002431 ORTHO05D002543 1.3e-08 62.8 57 59.6
Manes.13G016200 Manihot esculenta HOM05D005632 ORTHO05D006870 1.3e-08 62.8 30 90.0
Gorai.009G333200 Gossypium raimondii HOM05D005632 ORTHO05D006870 1.7e-08 62.4 31 87.1
Lalb_Chr12g0209221 Lupinus albus HOM05D002431 ORTHO05D002543 1.7e-08 62.4 58 53.4
Sed0026720 Sechium edule HOM05D005632 ORTHO05D006870 1.7e-08 62.4 30 86.7
Lj4g0002360 Lotus japonicus HOM05D002431 ORTHO05D002543 2.2e-08 62.0 64 50.0
QL03p041928 Quercus lobata HOM05D002431 ORTHO05D002543 2.2e-08 62.0 58 53.4
Cpa.g.sc43.34 Carica papaya HOM05D005632 ORTHO05D006870 2.9e-08 61.6 31 83.9
ClCG11G000810 Citrullus lanatus HOM05D002431 ORTHO05D002543 2.9e-08 61.6 61 55.7
COL.COLO4_12811 Corchorus olitorius HOM05D005632 ORTHO05D006870 2.9e-08 61.6 31 87.1
Lj6C822T14 Lonicera japonica HOM05D005632 ORTHO05D006870 3.7e-08 61.2 36 80.6
TWI77G0990 Tripterygium wilfordii HOM05D002431 ORTHO05D002543 3.7e-08 61.2 59 54.2
Cc11_g03240 Coffea canephora HOM05D002431 ORTHO05D002543 4.9e-08 60.8 58 55.2
Duzib251G0024 Durio zibethinus HOM05D005632 ORTHO05D006870 4.9e-08 60.8 30 86.7
Medtr8g080180 Medicago truncatula HOM05D005632 ORTHO05D006870 4.9e-08 60.8 41 65.9
Nitab4.5_0000240g0120 Nicotiana tabacum HOM05D005632 ORTHO05D006870 4.9e-08 60.8 29 89.7
Oeu006354.3 Olea europaea HOM05D002431 ORTHO05D002543 4.9e-08 60.8 68 51.5
Dinv14805 Davidia involucrata HOM05D005632 ORTHO05D006870 6.4e-08 60.5 28 92.9
Oeu020312.1 Olea europaea HOM05D005632 ORTHO05D006870 6.4e-08 60.5 28 92.9
Eucgr.B03464 Eucalyptus grandis HOM05D005632 ORTHO05D006870 8.3e-08 60.1 29 89.7
Gohir.D05G312000 Gossypium hirsutum HOM05D005632 ORTHO05D006870 8.3e-08 60.1 31 83.9
Lsat_1_v5_gn_4_26141 Lactuca sativa HOM05D002431 ORTHO05D002543 8.3e-08 60.1 62 51.6
BcaC03g14853 Brassica carinata HOM05D005632 ORTHO05D006870 1.1e-07 59.7 36 77.8
A02p14350 Brassica napus HOM05D005632 ORTHO05D006870 1.1e-07 59.7 36 77.8
BraA02t06496Z Brassica rapa HOM05D005632 ORTHO05D006870 1.1e-07 59.7 36 77.8
FvH4_4g24210 Fragaria vesca HOM05D005632 ORTHO05D006870 1.1e-07 59.7 30 86.7
FAN12G4104 Fragaria x ananassa HOM05D005632 ORTHO05D006870 1.1e-07 59.7 30 86.7
FAN17G2842 Fragaria x ananassa HOM05D005632 ORTHO05D006870 1.1e-07 59.7 30 86.7
FAN22G2239 Fragaria x ananassa HOM05D005632 ORTHO05D006870 1.1e-07 59.7 30 86.7
RcHm_v2.0_Chr4g0431051 Rosa chinensis HOM05D005632 ORTHO05D006870 1.1e-07 59.7 30 86.7
Aa31sc48G70 Aethionema arabicum HOM05D005632 ORTHO05D006870 1.4e-07 59.3 29 86.2
arahy.Tifrunner.gnm1.ann1.H5LZNT Arachis hypogaea HOM05D002431 ORTHO05D002543 1.4e-07 59.3 57 56.1
arahy.Tifrunner.gnm1.ann1.PUF5Z4 Arachis hypogaea HOM05D002431 ORTHO05D002543 1.4e-07 59.3 57 56.1
BcaB05g24299 Brassica carinata HOM05D005632 ORTHO05D006870 2.4e-07 58.5 35 80.0
Cc11_g16640 Coffea canephora HOM05D005632 ORTHO05D006870 2.4e-07 58.5 28 85.7
HPP92_001245 Vanilla planifolia HOM05D005632 ORTHO05D006870 2.4e-07 58.5 33 78.8
HPP92_001261 Vanilla planifolia HOM05D005632 ORTHO05D006870 2.4e-07 58.5 33 78.8
Aqoxy5G03509 Aquilegia oxysepala HOM05D005632 ORTHO05D006870 3.2e-07 58.2 27 88.9
CiPaw.05G163000 Carya illinoinensis HOM05D002431 ORTHO05D002543 3.2e-07 58.2 58 51.7
THA.LOC104825517 Tarenaya hassleriana HOM05D005632 ORTHO05D006870 3.2e-07 58.2 29 86.2
Eucgr.J01777 Eucalyptus grandis HOM05D002431 ORTHO05D002543 4.1e-07 57.8 64 50.0
Sabra10G0048400 Salix brachista HOM05D005632 ORTHO05D006870 4.1e-07 57.8 27 92.6
THA.LOC104824101 Tarenaya hassleriana HOM05D002431 ORTHO05D002543 4.1e-07 57.8 58 55.2
CsaV3_2G025340 Cucumis sativus L. HOM05D005632 ORTHO05D006870 5.4e-07 57.4 29 86.2
FAN07G2757 Fragaria x ananassa HOM05D005632 ORTHO05D006870 5.4e-07 57.4 30 83.3
CDE05G1253 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 7.0e-07 57.0 54 53.7
BolC2t08463H Brassica oleracea HOM05D005632 ORTHO05D006870 9.2e-07 56.6 36 75.0
PGR102G1157 Punica granatum HOM05D005632 ORTHO05D006870 1.2e-06 56.2 27 88.9
Sed0020525 Sechium edule HOM05D005632 ORTHO05D006870 1.6e-06 55.8 35 74.3
GSVIVG01010242001 Vitis vinifera HOM05D002431 ORTHO05D002543 1.6e-06 55.8 69 46.4
CiPaw.06G099900 Carya illinoinensis HOM05D005632 ORTHO05D006870 2.0e-06 55.5 26 92.3
CsaV3_5G012590 Cucumis sativus L. HOM05D002431 ORTHO05D002543 2.0e-06 55.5 57 52.6
CsaV3_5G012800 Cucumis sativus L. HOM05D002431 ORTHO05D002543 2.0e-06 55.5 57 52.6
Lalb_Chr07g0187331 Lupinus albus HOM05D005632 ORTHO05D006870 2.0e-06 55.5 35 71.4
PSO063G5034 Papaver somniferum HOM05D005632 ORTHO05D006870 2.0e-06 55.5 29 79.3
PSO782G1057 Papaver somniferum HOM05D005632 ORTHO05D006870 2.0e-06 55.5 29 79.3
CDE05G0828 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 2.7e-06 55.1 55 52.7
DCAR_030330 Daucus carota HOM05D002431 ORTHO05D002543 2.7e-06 55.1 60 46.7
Peaxi162Scf00097g01811 Petunia axillaris HOM05D002431 ORTHO05D002543 2.7e-06 55.1 58 53.4
RcHm_v2.0_Chr4g0446081 Rosa chinensis HOM05D002431 ORTHO05D002543 4.6e-06 54.3 66 47.0
Lalb_Chr07g0188081 Lupinus albus HOM05D002431 ORTHO05D002543 6.0e-06 53.9 56 48.2
Manes.10G068300 Manihot esculenta HOM05D002431 ORTHO05D002543 6.0e-06 53.9 58 50.0


User provided reference genes

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