Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 2.4e-99 365.5 186 100.0
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 2.9e-89 332.0 219 81.3
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 4.2e-72 275.0 193 77.7
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 2.5e-61 239.2 196 68.9
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 9.7e-61 237.3 180 69.4
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 4.8e-60 235.0 199 65.8
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 1.4e-59 233.4 180 70.0
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 5.3e-59 231.5 180 69.4
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 5.3e-59 231.5 186 68.8
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 6.9e-59 231.1 179 68.7
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 2.6e-58 229.2 183 67.8
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 4.5e-58 228.4 188 66.0
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 7.7e-58 227.6 189 69.3
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 3.8e-57 225.3 197 64.5
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 3.8e-57 225.3 189 65.1
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 6.5e-57 224.6 189 64.0
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 1.1e-56 223.8 197 65.0
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 7.2e-56 221.1 166 69.3
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 1.2e-55 220.3 191 61.8
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 4.7e-55 218.4 197 62.9
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 7.9e-55 217.6 167 68.9
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 7.9e-55 217.6 190 63.2
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 2.3e-54 216.1 188 64.4
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 2.3e-54 216.1 189 62.4
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 6.7e-54 214.5 190 62.6
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 8.8e-54 214.2 191 62.8
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 8.8e-54 214.2 190 62.1
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.1e-53 213.8 199 59.8
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 1.1e-53 213.8 190 63.7
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 1.5e-53 213.4 193 62.7
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 2.0e-53 213.0 190 61.1
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 2.6e-53 212.6 185 62.7
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 2.6e-53 212.6 199 60.3
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 4.4e-53 211.8 191 62.3
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 5.7e-53 211.5 193 60.6
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 7.4e-53 211.1 168 66.1
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 7.4e-53 211.1 181 60.8
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 1.3e-52 210.3 182 61.0
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 2.2e-52 209.5 199 58.8
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 2.8e-52 209.1 179 63.7
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 1.1e-51 207.2 190 61.1
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 7.0e-51 204.5 167 63.5
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 1.2e-50 203.8 181 61.3
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 1.2e-50 203.8 200 59.5
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 1.5e-50 203.4 198 59.6
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 2.9e-49 199.1 142 72.5
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 6.5e-49 198.0 153 62.7
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 8.5e-49 197.6 176 59.7
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 1.4e-48 196.8 162 66.7
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 1.9e-48 196.4 184 59.2
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 2.5e-48 196.1 180 58.3
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 5.5e-48 194.9 188 59.6
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 7.2e-48 194.5 226 49.6
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 9.4e-48 194.1 204 53.9
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.0e-46 189.1 162 61.1
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 3.0e-46 189.1 199 54.8
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 5.2e-46 188.3 190 56.8
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 8.8e-46 187.6 185 56.8
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 2.6e-45 186.0 221 52.0
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 7.4e-45 184.5 181 54.7
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 9.7e-45 184.1 210 53.8
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 1.3e-44 183.7 191 54.5
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 3.7e-44 182.2 194 53.1
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 1.1e-43 180.6 163 58.3
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 1.1e-43 180.6 163 58.9
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 7.0e-43 177.9 185 52.4
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 9.1e-43 177.6 190 54.2
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 1.2e-42 177.2 191 55.0
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 1.2e-42 177.2 187 51.9
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 1.6e-42 176.8 191 51.8
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 2.6e-42 176.0 199 50.3
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 1.3e-41 173.7 164 57.9
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 2.9e-41 172.6 199 51.8
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 8.5e-41 171.0 200 52.0
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 1.1e-40 170.6 199 51.3
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 1.5e-40 170.2 199 51.3
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 4.2e-40 168.7 196 51.0
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 7.2e-40 167.9 161 54.7
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 1.6e-39 166.8 157 54.8
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 4.7e-39 165.2 196 49.5
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 6.1e-39 164.9 196 50.5
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 8.0e-39 164.5 113 74.3
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 2.6e-37 159.5 161 54.0
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 5.7e-37 158.3 181 50.8
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 7.5e-37 157.9 146 56.2
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 2.8e-36 156.0 110 71.8
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 1.2e-31 140.6 129 60.5
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 1.6e-31 140.2 162 49.4
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 9.8e-29 131.0 141 54.6
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 3.5e-26 122.5 89 66.3
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 1.3e-25 120.6 87 69.0
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 2.3e-25 119.8 81 71.6
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 6.6e-25 118.2 192 43.2
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 4.2e-24 115.5 94 62.8
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 4.2e-24 115.5 79 70.9
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 2.1e-23 113.2 106 58.5
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 6.1e-23 111.7 148 47.3
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 2.3e-22 109.8 75 74.7
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 5.7e-21 105.1 102 57.8
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 5.7e-21 105.1 102 57.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.3e-20 104.0 74 67.6
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 6.3e-20 101.7 57 84.2
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 2.4e-19 99.8 72 70.8
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 1.2e-18 97.4 188 37.8
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 2.7e-18 96.3 110 53.6
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 1.7e-17 93.6 104 52.9
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 1.1e-16 90.9 110 39.1
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 1.5e-16 90.5 63 61.9
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 1.5e-16 90.5 63 61.9
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 2.5e-16 89.7 111 45.9
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 2.5e-16 89.7 124 33.9
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 1.2e-15 87.4 108 35.2
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 2.8e-15 86.3 87 55.2
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 1.2e-13 80.9 50 68.0
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 4.4e-13 79.0 55 72.7
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 4.4e-13 79.0 55 72.7
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 7.5e-13 78.2 54 72.2
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 7.8e-10 68.2 116 29.3
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 1.7e-09 67.0 54 61.1


User provided reference genes

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