Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 3.4e-124 448.4 230 100.0
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 1.0e-115 420.2 229 94.3
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 1.4e-96 356.7 227 82.4
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 1.5e-95 353.2 232 80.2
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 4.8e-94 348.2 229 77.7
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 8.2e-94 347.4 229 76.9
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 9.1e-93 344.0 234 77.4
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 1.5e-92 343.2 235 77.4
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 7.7e-92 340.9 236 75.4
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 1.7e-91 339.7 233 75.1
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 2.9e-91 339.0 230 78.7
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 6.5e-91 337.8 231 75.3
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 6.5e-91 337.8 231 75.3
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 6.5e-91 337.8 231 74.0
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 1.1e-90 337.0 236 73.7
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 1.9e-90 336.3 229 76.4
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.9e-90 336.3 231 74.9
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 5.5e-90 334.7 231 74.9
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 2.1e-89 332.8 231 73.2
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 3.6e-89 332.0 223 74.9
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 4.7e-89 331.6 227 78.4
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 8.8e-88 327.4 231 73.6
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 8.8e-88 327.4 237 73.8
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 8.8e-88 327.4 236 75.8
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 1.1e-87 327.0 230 73.5
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 2.0e-87 326.2 233 71.7
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 2.0e-87 326.2 231 74.5
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 3.3e-87 325.5 231 73.2
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 1.7e-86 323.2 230 71.7
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 1.7e-86 323.2 230 73.5
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 2.2e-86 322.8 235 71.1
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 2.8e-86 322.4 231 72.7
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 2.8e-86 322.4 230 73.9
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 6.3e-86 321.2 239 73.6
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 8.2e-86 320.9 231 74.0
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 8.2e-86 320.9 227 72.2
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 1.1e-85 320.5 230 72.6
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 1.8e-85 319.7 230 73.5
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 1.8e-85 319.7 230 73.5
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 1.8e-85 319.7 235 71.5
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 2.4e-85 319.3 232 70.7
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 3.1e-85 318.9 231 71.9
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 4.1e-85 318.5 183 85.8
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 5.3e-85 318.2 234 71.8
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 5.3e-85 318.2 233 72.1
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 7.0e-85 317.8 230 73.0
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 7.0e-85 317.8 230 73.0
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 1.2e-84 317.0 233 71.7
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.2e-84 317.0 235 73.6
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 3.5e-84 315.5 231 72.3
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 1.0e-83 313.9 228 69.3
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 1.0e-83 313.9 230 71.3
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 2.9e-83 312.4 234 70.1
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 3.8e-83 312.0 260 65.4
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 1.1e-82 310.5 200 80.5
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 1.9e-82 309.7 232 72.8
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 1.2e-81 307.0 231 70.1
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 2.7e-81 305.8 242 66.5
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 3.6e-81 305.4 231 69.7
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 6.1e-81 304.7 224 71.9
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 8.0e-81 304.3 231 70.6
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 1.2e-79 300.4 231 70.6
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 3.3e-79 298.9 215 68.8
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 5.7e-79 298.1 239 69.5
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 3.7e-78 295.4 233 65.2
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 6.3e-78 294.7 237 68.8
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.1e-77 293.9 233 70.0
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 1.4e-77 293.5 231 65.8
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 9.1e-77 290.8 237 67.5
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 2.0e-76 289.7 239 67.8
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 4.5e-76 288.5 231 65.8
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 5.9e-76 288.1 234 64.1
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 8.5e-75 284.3 230 64.3
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 1.1e-74 283.9 230 66.5
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 3.2e-74 282.3 233 66.1
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 2.1e-73 279.6 230 65.2
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 6.1e-73 278.1 224 63.8
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 5.7e-71 271.6 242 64.0
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 7.5e-71 271.2 215 64.2
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 3.7e-70 268.9 224 63.8
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 4.8e-70 268.5 235 60.0
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 1.1e-69 267.3 180 73.3
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 3.1e-69 265.8 203 66.0
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.0e-67 260.8 227 60.8
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 2.1e-65 253.1 238 58.4
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 1.0e-64 250.8 232 61.2
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 1.2e-63 247.3 235 59.1
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 1.7e-62 243.4 224 60.3
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 4.9e-62 241.9 234 59.4
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 6.3e-62 241.5 163 72.4
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 7.8e-60 234.6 142 80.3
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 1.0e-59 234.2 222 59.0
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 7.3e-58 228.0 140 80.7
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 1.0e-56 224.2 142 79.6
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 1.8e-56 223.4 185 63.2
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 3.4e-55 219.2 188 61.2
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 1.1e-53 214.2 140 77.1
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 1.7e-51 206.8 136 77.9
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 3.3e-50 202.6 235 52.3
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 4.4e-47 192.2 141 78.0
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 9.8e-47 191.0 125 78.4
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 9.5e-42 174.5 187 47.1
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 1.2e-41 174.1 96 82.3
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 8.1e-41 171.4 192 46.9
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 8.1e-41 171.4 230 49.6
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 1.8e-40 170.2 190 49.5
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 7.5e-39 164.9 179 46.4
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 8.6e-35 151.4 135 59.3
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 7.3e-34 148.3 179 43.6
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 1.9e-29 133.7 92 77.2
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 4.6e-28 129.0 228 41.7
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 2.3e-27 126.7 167 40.1
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 7.1e-21 105.1 91 69.2
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 2.8e-17 93.2 58 79.3
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 6.0e-12 75.5 170 30.0
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 3.0e-11 73.2 230 30.0
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 5.1e-11 72.4 163 25.8
Cfa009324 Carpinus fangiana HOM05D001304 ORTHO05D124287 7.6e-07 58.5 41 80.5


User provided reference genes

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