Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009271 Carpinus fangiana HOM05D005863 ORTHO05D003355 0.0e+00 1593.9 864 100.0
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 0.0e+00 1198.3 1041 68.6
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.5e-204 717.2 1073 48.6
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 7.4e-164 582.0 1015 43.8
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 7.1e-82 309.7 901 34.9
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.2e-68 265.8 1186 29.8
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.0e-55 221.9 927 30.2
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.3e-54 219.2 879 29.2
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.2e-54 218.4 689 34.1
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.5e-52 211.1 745 32.9
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 3.5e-52 211.1 999 28.5
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 8.5e-43 179.9 644 31.7
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.9e-42 178.7 824 27.9
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.8e-40 172.2 727 31.6
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 3.3e-39 167.9 810 30.2
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 7.5e-39 166.8 827 29.7
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 3.5e-36 157.9 903 30.6
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 4.5e-36 157.5 743 30.0
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 3.6e-33 147.9 962 28.2
Hma1.2p1_0815F.1_g222840 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 3.0e-32 144.8 292 41.4
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 5.2e-32 144.1 875 28.0
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 8.8e-32 143.3 1031 26.1
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.4e-31 141.4 894 28.1
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 3.7e-30 137.9 838 27.9
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 3.7e-30 137.9 838 27.8
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.4e-29 136.0 683 30.2
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 7.0e-29 133.7 880 27.6
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 7.0e-29 133.7 867 27.1
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.7e-27 129.0 1019 25.9
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 8.6e-27 126.7 838 27.7
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 3.3e-26 124.8 834 27.6
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.4e-24 119.4 972 25.9
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 8.9e-24 116.7 1021 25.7
Ca_25120_v3 Cicer arietinum L. HOM05D013281 ORTHO05D015409 2.0e-23 115.5 566 31.3
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 7.5e-23 113.6 678 27.4
Eucgr.B03235 Eucalyptus grandis HOM05D005863 ORTHO05D003355 9.8e-23 113.2 979 25.3
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.7e-20 105.1 967 25.9
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 2.7e-20 105.1 442 31.2
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.7e-19 102.4 802 26.3
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.7e-19 102.4 802 26.3
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 2.9e-19 101.7 964 25.6
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.6e-17 95.9 821 27.2
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 2.8e-17 95.1 777 24.7
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 4.0e-16 91.3 146 45.9
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 4.0e-16 91.3 415 31.3
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 4.0e-16 91.3 443 28.7
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.5e-15 89.4 519 29.7
Lalb_Chr11g0075591 Lupinus albus HOM05D013281 ORTHO05D015409 3.4e-15 88.2 523 28.5
Actinidia08108 Actinidia chinensis HOM05D005863 ORTHO05D003355 2.2e-14 85.5 734 23.4
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 2.2e-14 85.5 125 48.8
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 8.3e-14 83.6 894 24.2
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 1.4e-13 82.8 796 25.5
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.9e-13 82.4 854 25.8
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 5.4e-13 80.9 572 25.3
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.2e-12 79.7 638 25.5
Gohir.D02G155300 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.6e-12 77.8 849 25.0
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 7.8e-12 77.0 143 44.1
Cpa.g.sc369.5 Carica papaya HOM05D005863 ORTHO05D003355 3.0e-11 75.1 67 65.7
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 5.0e-11 74.3 669 26.6
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.5e-10 72.8 849 24.7
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.9e-10 72.4 839 24.8
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 9.5e-10 70.1 414 28.5
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.1e-08 66.6 922 24.8
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 1.4e-08 66.2 127 44.9
MBI08_g04927_MAGBIO Magnolia biondii HOM05D028369 ORTHO05D028689 6.8e-08 63.9 429 26.6
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 1.3e-06 59.7 550 25.8
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.3e-06 59.7 389 28.3
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.3e-06 59.7 477 26.8


User provided reference genes

Program Settings