Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 0.0e+00 1292.7 738 100.0
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 0.0e+00 1112.1 771 86.0
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 1.7e-302 1042.3 812 71.6
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 3.1e-288 995.0 810 68.1
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 2.0e-274 949.1 817 66.0
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.9e-272 942.6 736 70.2
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 3.5e-271 938.3 804 68.7
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 6.6e-270 934.1 857 64.5
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.1e-267 926.8 807 65.1
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 5.1e-262 907.9 812 63.1
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.5e-261 906.4 812 63.2
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 2.5e-261 905.6 842 66.5
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 3.3e-261 905.2 740 69.1
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 5.6e-261 904.4 812 64.8
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.1e-259 900.2 826 63.1
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.4e-259 899.8 820 62.7
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.8e-259 899.4 812 62.8
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 7.1e-256 887.5 819 61.4
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 9.2e-256 887.1 824 62.0
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 7.8e-255 884.0 812 62.4
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.3e-254 883.2 824 60.8
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.3e-254 882.5 835 61.3
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 6.6e-254 880.9 808 66.6
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.1e-253 880.2 795 63.9
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 1.9e-253 879.4 818 60.6
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 4.3e-253 878.2 809 63.9
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 5.6e-253 877.9 834 60.6
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.6e-253 877.9 804 61.2
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 6.2e-252 874.4 805 63.0
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 3.1e-251 872.1 801 63.7
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 4.0e-251 871.7 820 60.4
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.4e-250 868.6 816 59.4
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 3.8e-249 865.1 790 63.7
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 2.7e-247 859.0 798 60.8
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 7.8e-247 857.4 825 60.5
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 1.7e-246 856.3 805 62.2
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.0e-246 855.5 806 61.0
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.5e-245 853.2 821 60.7
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.6e-245 851.3 820 59.4
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.6e-244 848.6 820 58.4
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 3.6e-244 848.6 805 64.1
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 6.2e-244 847.8 792 63.0
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.8e-243 846.3 806 60.5
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.4e-243 845.9 777 64.5
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 3.1e-243 845.5 806 60.4
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 5.3e-243 844.7 810 60.7
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 1.5e-242 843.2 772 67.2
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.5e-242 843.2 810 59.3
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 9.9e-242 840.5 784 61.0
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 9.9e-242 840.5 740 62.8
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.3e-241 840.1 779 61.0
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.3e-241 840.1 808 60.9
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 1.7e-241 839.7 813 59.5
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 6.4e-241 837.8 797 58.5
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 6.4e-241 837.8 790 59.4
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 6.4e-241 837.8 798 59.9
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.4e-240 836.6 806 60.7
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.9e-240 836.3 799 60.8
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 9.3e-240 833.9 808 59.7
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.2e-239 833.6 828 63.9
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 1.2e-239 833.6 752 63.7
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 7.9e-239 830.9 810 59.1
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 1.1e-237 827.0 806 59.2
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 1.9e-237 826.2 806 59.7
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 2.8e-236 822.4 805 58.5
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 9.0e-235 817.4 818 61.7
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 1.6e-231 806.6 789 63.5
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 2.1e-231 806.2 695 69.8
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.7e-231 805.8 755 62.8
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 3.5e-231 805.4 792 63.4
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 8.7e-230 800.8 789 58.3
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.1e-229 800.4 746 67.4
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 1.9e-229 799.7 822 57.5
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 5.6e-229 798.1 787 59.1
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 5.6e-229 798.1 685 69.9
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 2.4e-227 792.7 782 59.5
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.2e-226 790.4 787 58.1
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.0e-226 789.6 812 58.5
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 5.8e-226 788.1 795 58.1
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 4.9e-225 785.0 802 58.4
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.4e-224 783.5 744 60.6
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 6.0e-223 778.1 832 55.6
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 6.3e-220 768.1 881 53.8
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.0e-209 731.9 793 54.0
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-207 725.7 812 54.7
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 3.0e-206 722.6 807 55.3
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 7.4e-205 718.0 808 57.5
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 3.2e-200 702.6 812 54.3
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 7.9e-199 698.0 813 57.1
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.5e-197 693.7 769 52.9
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.6e-197 693.0 807 56.8
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.1e-195 687.6 813 53.6
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 4.1e-195 685.6 818 52.8
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 2.0e-194 683.3 818 52.7
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 5.9e-194 681.8 804 56.7
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 1.0e-193 681.0 642 61.4
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.2e-189 667.5 807 55.8
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 3.3e-189 666.0 814 52.5
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.0e-182 642.5 757 51.1
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.5e-181 640.6 730 52.9
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 5.7e-181 638.6 730 52.6
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.8e-180 635.6 771 49.3
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 8.3e-180 634.8 730 52.6
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 7.7e-178 628.2 808 49.1
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 8.6e-177 624.8 911 46.0
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.2e-175 620.9 784 51.4
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 2.0e-165 587.0 791 45.3
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.2e-162 577.8 727 49.1
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 5.9e-162 575.5 783 46.6
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.8e-158 563.9 817 44.1
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.2e-154 551.2 439 66.1
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 7.5e-149 531.9 543 57.8
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 1.9e-139 500.7 641 49.0
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.0e-137 495.0 466 68.5
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 4.3e-136 489.6 714 43.7
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 2.2e-132 477.2 534 54.5
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.4e-131 473.8 707 42.1
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 3.0e-129 466.8 692 43.8
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.1e-126 456.8 467 58.2
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 8.1e-119 432.2 517 51.5
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 3.4e-117 426.8 880 37.0
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 7.1e-115 419.1 511 51.3
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.8e-113 414.5 413 59.8
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 4.8e-111 406.4 348 64.1
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.4e-107 394.8 846 37.7
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.9e-105 386.7 313 65.5
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 1.7e-100 371.3 535 45.4
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.1e-96 358.6 248 75.4
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 6.1e-90 336.3 506 41.5
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 5.1e-89 333.2 552 38.4
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 1.7e-87 328.2 723 36.8
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 1.8e-86 324.7 501 39.9
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 2.4e-86 324.3 456 43.4
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.5e-84 315.8 550 45.1
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 2.2e-79 301.2 446 43.7
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.6e-56 224.6 218 58.3
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 4.9e-55 220.3 392 40.1
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.1e-54 219.2 757 28.0
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.1e-54 219.2 365 43.0
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 4.0e-49 200.7 355 42.0
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 3.3e-43 181.0 185 60.5
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-40 171.8 328 39.9
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.3e-39 169.1 134 62.7
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.4e-39 166.8 307 41.4
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 1.5e-32 145.6 137 56.9
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 4.9e-31 140.6 131 61.1
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.9e-30 138.7 130 61.5
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.6e-29 134.0 234 40.2
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.7e-26 124.0 285 37.5
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 9.9e-24 116.3 110 55.5
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 1.3e-23 115.9 96 62.5
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.9e-23 114.8 196 41.8
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-22 112.5 236 36.9
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.6e-21 107.5 129 51.2
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-20 104.8 108 54.6
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.3e-19 101.3 126 51.6
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 9.6e-19 99.8 220 36.4
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.8e-18 98.2 206 37.9
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.8e-18 98.2 85 57.6
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.8e-17 95.5 80 60.0
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.0e-17 93.2 272 34.2
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.3e-14 83.2 216 34.7
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-13 81.6 73 60.3
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 1.0e-12 79.7 133 42.1
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 1.3e-12 79.3 106 50.0
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.1e-12 77.4 150 38.7
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.9e-11 75.5 79 50.6
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.3e-11 74.7 72 52.8
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 1.4e-09 69.3 57 66.7
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 1.8e-09 68.9 76 50.0
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 6.9e-09 67.0 69 49.3
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.0e-09 66.6 149 36.9
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.2e-08 66.2 57 66.7
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-08 65.9 74 50.0
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.6e-08 63.5 65 50.8
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 3.8e-07 61.2 41 68.3
HPP92_028506 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-06 58.9 36 77.8
HPP92_026825 Vanilla planifolia HOM05D003551 ORTHO05D004343 2.4e-06 58.5 296 30.1
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 3.2e-06 58.2 105 38.1
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.2e-06 58.2 57 54.4
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 5.4e-06 57.4 58 56.9


User provided reference genes

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