Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 8.3e-28 126.3 64 100.0
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 8.3e-28 126.3 64 100.0
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 6.1e-23 110.2 62 88.7
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 1.8e-22 108.6 64 84.4
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 3.0e-22 107.8 64 82.8
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 4.0e-22 107.5 64 82.8
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 5.2e-22 107.1 64 81.2
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 8.9e-22 106.3 64 81.2
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 8.9e-22 106.3 64 81.2
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 1.5e-21 105.5 64 78.1
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 7.5e-21 103.2 62 80.6
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 9.8e-21 102.8 65 81.5
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 9.8e-21 102.8 64 78.1
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 9.8e-21 102.8 64 79.7
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 9.8e-21 102.8 64 79.7
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 1.3e-20 102.4 64 78.1
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 2.2e-20 101.7 64 79.7
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 3.7e-20 100.9 64 78.1
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 3.7e-20 100.9 60 80.0
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 3.7e-20 100.9 64 75.0
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 6.4e-20 100.1 62 75.8
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 6.4e-20 100.1 62 75.8
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 6.4e-20 100.1 64 76.6
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 6.4e-20 100.1 64 76.6
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 8.3e-20 99.8 62 74.2
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 8.3e-20 99.8 65 78.5
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 1.1e-19 99.4 60 78.3
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 1.4e-19 99.0 57 84.2
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 1.4e-19 99.0 64 75.0
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 1.4e-19 99.0 64 71.9
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 1.8e-19 98.6 65 76.9
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 1.8e-19 98.6 64 71.9
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 1.8e-19 98.6 64 71.9
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 2.4e-19 98.2 65 78.5
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 2.4e-19 98.2 65 75.4
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 3.2e-19 97.8 60 76.7
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 3.2e-19 97.8 65 78.5
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 3.2e-19 97.8 65 78.5
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 3.2e-19 97.8 64 71.9
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 4.1e-19 97.4 64 73.4
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 4.1e-19 97.4 64 73.4
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 4.1e-19 97.4 64 73.4
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 4.1e-19 97.4 65 75.4
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 5.4e-19 97.1 64 73.4
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 7.0e-19 96.7 62 72.6
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 7.0e-19 96.7 64 75.0
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 7.0e-19 96.7 64 73.4
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 9.2e-19 96.3 64 71.9
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 9.2e-19 96.3 64 71.9
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 9.2e-19 96.3 64 70.3
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 1.2e-18 95.9 64 75.0
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 2.0e-18 95.1 64 70.3
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 2.0e-18 95.1 65 75.4
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 2.7e-18 94.7 64 73.4
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 3.5e-18 94.4 64 71.9
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 3.5e-18 94.4 64 71.9
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 3.5e-18 94.4 55 81.8
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 7.8e-18 93.2 55 80.0
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 7.8e-18 93.2 55 80.0
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 7.8e-18 93.2 55 80.0
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 1.0e-17 92.8 60 71.7
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 1.3e-17 92.4 64 71.9
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.7e-17 92.0 64 68.8
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 1.7e-17 92.0 64 67.2
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 2.3e-17 91.7 63 73.0
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 2.3e-17 91.7 60 75.0
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 3.0e-17 91.3 64 67.2
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 3.0e-17 91.3 64 70.3
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 3.9e-17 90.9 64 70.3
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 5.0e-17 90.5 64 70.3
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 6.6e-17 90.1 64 64.1
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 8.6e-17 89.7 62 69.4
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 1.1e-16 89.4 64 64.1
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.5e-16 89.0 64 67.2
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 1.5e-16 89.0 61 70.5
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 1.9e-16 88.6 84 59.5
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 1.9e-16 88.6 64 65.6
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 2.5e-16 88.2 64 62.5
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 3.3e-16 87.8 64 68.8
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 3.3e-16 87.8 71 62.0
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 3.3e-16 87.8 65 70.8
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 4.3e-16 87.4 59 66.1
GSVIVG01000581001 Vitis vinifera HOM05D007493 ORTHO05D009465 6.4e-12 73.6 62 56.5
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 5.4e-11 70.5 35 88.6
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 7.0e-11 70.1 35 85.7
BcaB03g15377 Brassica carinata HOM05D000053 ORTHO05D000035 5.0e-09 63.9 64 56.2
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 5.0e-09 63.9 49 59.2
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 5.0e-09 63.9 35 77.1
Ca_17793_v3 Cicer arietinum L. HOM05D007493 ORTHO05D009465 1.5e-08 62.4 59 62.7
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 9.5e-08 59.7 39 71.8
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 2.3e-06 55.1 36 72.2
Sabra15G0110700 Salix brachista HOM05D000069 ORTHO05D000060 5.2e-06 53.9 35 65.7
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 8.9e-06 53.1 36 69.4


User provided reference genes

Program Settings