Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 1.2e-74 283.1 148 100.0
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.6e-50 201.8 107 98.1
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 2.2e-31 139.4 101 77.2
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 2.9e-31 139.0 111 70.3
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 3.2e-30 135.6 107 72.0
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 3.2e-30 135.6 107 70.1
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 3.0e-28 129.0 109 67.0
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 8.6e-28 127.5 108 69.4
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 8.6e-28 127.5 107 67.3
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 1.5e-27 126.7 113 64.6
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 1.9e-27 126.3 115 62.6
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 3.3e-27 125.6 107 62.6
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 3.3e-27 125.6 119 61.3
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 4.3e-27 125.2 101 68.3
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 5.6e-27 124.8 105 66.7
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 7.3e-27 124.4 107 65.4
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 2.1e-26 122.9 107 63.6
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 2.1e-26 122.9 107 63.6
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 2.8e-26 122.5 108 64.8
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 6.2e-26 121.3 107 64.5
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 8.0e-26 120.9 107 66.4
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 1.4e-25 120.2 109 61.5
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 1.4e-25 120.2 107 63.6
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 1.4e-25 120.2 108 63.9
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.8e-25 119.8 107 66.4
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 2.3e-25 119.4 108 63.9
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 4.0e-25 118.6 107 63.6
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 5.2e-25 118.2 110 61.8
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 5.2e-25 118.2 107 63.6
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 8.9e-25 117.5 109 62.4
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 8.9e-25 117.5 109 61.5
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 1.2e-24 117.1 107 59.8
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 1.5e-24 116.7 98 67.3
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 2.0e-24 116.3 109 61.5
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 2.6e-24 115.9 108 63.0
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 3.4e-24 115.5 107 61.7
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 4.4e-24 115.2 105 62.9
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 5.8e-24 114.8 111 61.3
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 7.5e-24 114.4 80 75.0
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 7.5e-24 114.4 107 58.9
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 7.5e-24 114.4 86 73.3
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 7.5e-24 114.4 107 59.8
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 9.8e-24 114.0 106 62.3
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 1.3e-23 113.6 105 62.9
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 1.7e-23 113.2 106 61.3
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 1.7e-23 113.2 119 53.8
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 1.7e-23 113.2 107 57.9
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 2.2e-23 112.8 107 59.8
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 2.9e-23 112.5 107 59.8
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 3.7e-23 112.1 107 62.6
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 3.7e-23 112.1 109 59.6
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 4.9e-23 111.7 107 58.9
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 4.9e-23 111.7 107 61.7
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 6.4e-23 111.3 107 60.7
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 6.4e-23 111.3 79 75.9
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 6.4e-23 111.3 79 74.7
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 6.4e-23 111.3 111 59.5
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 8.3e-23 110.9 107 61.7
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 1.4e-22 110.2 108 59.3
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 1.4e-22 110.2 80 76.2
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 1.9e-22 109.8 109 60.6
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 2.4e-22 109.4 109 61.5
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 2.4e-22 109.4 107 61.7
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 3.2e-22 109.0 107 59.8
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.2e-22 109.0 111 59.5
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.2e-22 109.0 107 60.7
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 3.2e-22 109.0 109 60.6
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 3.2e-22 109.0 109 60.6
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 3.2e-22 109.0 109 57.8
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 4.1e-22 108.6 109 60.6
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 4.1e-22 108.6 107 60.7
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 5.4e-22 108.2 111 58.6
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 5.4e-22 108.2 79 73.4
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 7.0e-22 107.8 80 73.8
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 9.2e-22 107.5 107 58.9
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 1.2e-21 107.1 107 60.7
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 1.2e-21 107.1 107 60.7
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 1.2e-21 107.1 107 60.7
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 1.2e-21 107.1 107 60.7
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 1.2e-21 107.1 107 60.7
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 1.2e-21 107.1 78 75.6
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 1.6e-21 106.7 108 61.1
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 1.6e-21 106.7 106 55.7
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 2.1e-21 106.3 107 54.2
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 2.1e-21 106.3 106 53.8
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 2.1e-21 106.3 108 62.0
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 2.1e-21 106.3 79 73.4
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 2.7e-21 105.9 109 56.9
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 2.7e-21 105.9 109 57.8
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 3.5e-21 105.5 107 58.9
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 3.5e-21 105.5 116 54.3
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 4.6e-21 105.1 107 57.9
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 6.0e-21 104.8 146 51.4
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 7.8e-21 104.4 76 73.7
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 7.8e-21 104.4 110 58.2
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 1.0e-20 104.0 107 58.9
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 1.3e-20 103.6 107 59.8
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 1.3e-20 103.6 107 59.8
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 1.3e-20 103.6 79 72.2
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 1.3e-20 103.6 107 57.9
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 1.7e-20 103.2 107 58.9
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 2.3e-20 102.8 107 58.9
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 2.3e-20 102.8 107 57.9
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.9e-20 102.1 88 63.6
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.1e-20 101.7 88 63.6
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.1e-20 101.7 88 63.6
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 6.6e-20 101.3 79 72.2
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.6e-20 101.3 79 69.6
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.6e-20 101.3 88 63.6
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 8.6e-20 100.9 79 69.6
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 8.6e-20 100.9 77 68.8
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 8.6e-20 100.9 78 70.5
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 8.6e-20 100.9 78 70.5
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 8.6e-20 100.9 78 70.5
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 8.6e-20 100.9 78 70.5
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 1.1e-19 100.5 79 70.9
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 1.1e-19 100.5 79 69.6
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 1.5e-19 100.1 107 55.1
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 1.9e-19 99.8 85 65.9
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 3.3e-19 99.0 74 74.3
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 4.3e-19 98.6 77 70.1
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 7.3e-19 97.8 82 68.3
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 7.3e-19 97.8 132 47.7
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 7.3e-19 97.8 77 70.1
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 2.8e-18 95.9 107 53.3
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 6.2e-18 94.7 114 48.2
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 6.2e-18 94.7 80 63.8
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 2.3e-17 92.8 79 64.6
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 3.1e-17 92.4 94 56.4
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 4.0e-17 92.0 114 47.4
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 3.4e-16 89.0 79 60.8
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 6.4e-15 84.7 89 56.2
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 1.4e-14 83.6 87 56.3
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 3.2e-14 82.4 104 53.8
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-13 80.1 65 66.2
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 2.8e-10 69.3 94 48.9
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 3.6e-10 68.9 68 60.3
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 3.4e-08 62.4 57 59.6
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.7e-07 60.1 60 61.7


User provided reference genes

Program Settings